Genomic Location: not available for this species
NR annotation: CAB4005908.1, Sortilin-related receptor [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4005909.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q98930 | Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1 |
| P0DSP1 | Sortilin-related receptor OS=Rattus norvegicus OX=10116 GN=Sorl1 PE=1 SV=1 |
| Q95209 | Sortilin-related receptor OS=Oryctolagus cuniculus OX=9986 GN=SORL1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000636 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15901 all species → | Sortilin_C | Sortilin, neurotensin receptor 3, C-terminal | Domain | Interproscan |
| PF15902 all species → | Sortilin-Vps10 | Sortilin, neurotensin receptor 3, | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR031777 all species → | Domain | Sortilin, C-terminal | Interproscan |
| IPR031778 all species → | Domain | Sortilin, N-terminal | Interproscan |
| IPR006581 all species → | Domain | VPS10 | Interproscan |
| IPR050310 all species → | Family | VPS10-related sortilin family receptors | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12106 all species → | SORTILIN RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005794 all species → | Cellular Component | Golgi apparatus | Interproscan |
| GO:0006892 all species → | Biological Process | post-Golgi vesicle-mediated transport | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
CAB4005909.1.Transcript abundance of CAB4005909.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
