Genomic Location: not available for this species
NR annotation: CAB4005913.1, Translation initiation factor eIF-2B subunit alpha [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4005913.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q0IIF2 | Translation initiation factor eIF2B subunit alpha OS=Bos taurus OX=9913 GN=EIF2B1 PE=2 SV=1 |
| Q99LC8 | Translation initiation factor eIF2B subunit alpha OS=Mus musculus OX=10090 GN=Eif2b1 PE=1 SV=1 |
| Q64270 | Translation initiation factor eIF2B subunit alpha OS=Rattus norvegicus OX=10116 GN=Eif2b1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006506 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01008 all species → | IF-2B | Initiation factor 2 subunit family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR042528 all species → | Homologous_superfamily | Translation initiation factor eIF-2B subunit alpha, N-terminal | Interproscan |
| IPR000649 all species → | Family | Initiation factor 2B-related | Interproscan |
| IPR037171 all species → | Homologous_superfamily | NagB/RpiA transferase-like | Interproscan |
| IPR051501 all species → | Family | Eukaryotic initiation factor 2B subunits alpha/beta/delta | Interproscan |
| IPR042529 all species → | Homologous_superfamily | Initiation factor 2B-like, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45860 all species → | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0044237 all species → | Biological Process | obsolete cellular metabolic process | Interproscan |
| GO:0003743 all species → | Molecular Function | translation initiation factor activity | Interproscan |
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0005851 all species → | Cellular Component | eukaryotic translation initiation factor 2B complex | Interproscan |
| GO:0006413 all species → | Biological Process | translational initiation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03239 | EIF2B1; translation initiation factor eIF-2B subunit alpha | - | Translation factors | ko03012 | deepkoala |
Transcript abundance of CAB4005913.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
