Genomic Location: not available for this species
NR annotation: CAB4006006.1, Transmembrane and coiled-coil domain-containing 3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4006006.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6UWJ1 | Transmembrane and coiled-coil domain-containing protein 3 OS=Homo sapiens OX=9606 GN=TMCO3 PE=1 SV=1 |
| Q8BH01 | Transmembrane and coiled-coil domain-containing protein 3 OS=Mus musculus OX=10090 GN=Tmco3 PE=2 SV=1 |
| Q8VYR9 | K(+) efflux antiporter 5 OS=Arabidopsis thaliana OX=3702 GN=KEA5 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005880 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00999 all species → | Na_H_Exchanger | Sodium/hydrogen exchanger family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045158 all species → | Family | K(+) efflux antiporter 4/5/6-like | Interproscan |
| IPR006153 all species → | Domain | Cation/H+ exchanger | Interproscan |
| IPR038770 all species → | Homologous_superfamily | Sodium/solute symporter superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16254 all species → | POTASSIUM/PROTON ANTIPORTER-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015386 all species → | Molecular Function | potassium:proton antiporter activity | Interproscan |
| GO:0071805 all species → | Biological Process | potassium ion transmembrane transport | Interproscan |
| GO:1902600 all species → | Biological Process | proton transmembrane transport | Interproscan |
| GO:0006812 all species → | Biological Process | monoatomic cation transport | Interproscan |
| GO:0015297 all species → | Molecular Function | antiporter activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
CAB4006006.1.Transcript abundance of CAB4006006.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
