Gene detail

Detailed information of CAB4006015.1 in Paramuricea clavata

Genomic Location: pcla8_s005499:136...11731
NR annotation: CAB4006014.1, methyltransferase 13 isoform X1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A019600-2

CCTAAAGATCGAGTACTAGTTGCAGGTATATAAAGAGTactaatttattttataataattaacaatgtATTTGGAAGTTGTGATGTGGGGTGTATATTACCAAATCAAATATGGCCATCACTGGCCATGGGTGCATGGTGGGATGTTAACAACAAACACAAGTAAGAAACTAGTGATTGACTGATTGTGCAGCAATCGGAAATTACCTATTATTCATGGCACAATCTACCCGATGTGGATACCGATTTTATAATGACTTCAATAATTGAAGTCACTTCATAATATCAGTTGACCCAGTAAAGTTGACGTCATTCATGTCGTCGTCATTCATTACTGCAACCAAATATCATTGAAACTAGGGGTGAGCCGATGTCTAAAAAAAGCCGATTACCGATACCGATTGTTAACAGCCGATATTTACCCAccatcggccgattaatcggcaaAACCGATGGTCATCTTAATTTTTTTACTAATGTATCCTCTCGTCAAAAGACTAAAAAAATGCAGCAACAGGAAGCGATATTTTTAACACTGATTCTGAAATCCACAGCGTGCTACGTACTGACTGGTCAACGGAAGTTACGGAAcacaataatttaattaattaataaatcttgcagaaatgcCAGAAAAGTGAGAAAACAACTATGAAAAAATGCGGGAAATTGGTAAACATAGTGTTTCCACTTTCGTTTCGATAATTGTTTCCACaccaaatatttgaatttcatttttttataaCACTGCTGACCATACAAATGGTGGAAGACAATGGCCGATTGTGAAAGACTAGGTTTTGCCGATGTTTTGCCGATGATCGGCTCACCTCTAATTGAAACCGTTAATAAATGGCATGCTTTACacattaatttaacatattgtgttaaaaaacaATGTGTATCAATCTGCAATgcatattttctcaacaatcggttttagACAATTATCGATAATTCTACCGATTCCAATTGTCTACTGATAAGACAAAAATCGAATCAAAGGGGTGCCGTTTACCTGTCAATCACTatacagggttcgtacgggtcctggaaaacctggaaagtcatggaatttcaacattccaaaatccaggcctggaaatccCGGAAAATCAATGTTAgtcatggaaagtcatggaaaattgaaattttacataacattaacaaagtatttttataattacttatttcaatttacctgtcataacaataatatgaattgttgtTGTATAACGAATTTTTGCaagagcgaagtgaattttgttcttttattatatctgttatcgttaaaatattaacgaatttcagaaattccagtcttccaggtcatggattttgGAAAAAATGGTCATGGAAAGTTGTggaaaagtcatggaattttaaatggGAGAAAGTGTGAAACCACTACTGAGTTTGTTGGTGTATTGCCTGACCTACTAGTACTTAGTCTCCTGGATTTTGGAGGCATCTCCTACATGAAGACAATTTGAAAAAATCCCCTCATTACATGTCTTTTAATACTTGCAACGATGAAGTGTTGGGAGTGCTTTTAATGCAGTCCATTTAGTGATGTCCGTTAATGTTCATTATATTGGCTCAATATATTAATTCACACAATAACCCTTATACaatgtagcctgcgaacaggctctcaagctgaattgagagcctgcatcaatgactaatgaatttgaatatctgcgtctgaaatcgtgacgcgaaattctcattggtcagatgctataatttatattattccgctgagctctatatatgtcaactgctctATGCacaaaaaaacacattaactgatcaaattggtcttggccatcttatctcaaagcacgaaatgttctgttttgagaaaacagtatttaaaacatttaaacttttgcttcaatatcctatatttcgaaaaacagtataaactgtacagtctaaatttagtttgcatggtctaaatttagtttgcacgaaagttgtaaacaacaccatataaggatagacattccatatgtggaaaaacgaacgttacggggcagatattcaaattcattagtcatcgatgcaggctctcaattcagcttgagagcctgttcgcaggctatatacAATGAGGAAACCCTTGTCAGGATTCATGCCTGTGGATGGTGTCCATGTCCTTTATACATGGCGAGTTGCTCATGCACGGATGCACCATTATGCACATGTGTTTTGTAGCATGTTGCATGTCAATTGCTGATGTTATTTAGGCCCTGACGAAAACAAACAAGCTTGACAAAATTATCAACATTAGTTGGTGACCCAAGGCACTTTTTGTACACCATGTGCACAATGACTCAATATACacatttatttttcaatttaacccattaagctgcagagtttccccattgacgagtacaatcgtctggcattaaacaggtaaaaaaaataagtagggcgcactgtgGCACATTGCGGCTGAATTTAATAACAGTAATATTTATTGTTCTGGCAAAAAGTAGCCAATCCATAAAATAAACTTAAATATGTCCCTGAACTAGTTTCTTCATCATGAAAAAGGTGCTTCACAACTAAATATACGTTGTTTTGAGGCATGCATTAAACAACTACAGTTATATTTAATTTTGCCTAGTGACTTAATGCTGTATTGTATTACAAAAGTCTTtcttaatataaaaataaccaaaaatgaaaatggtcttgataatacaaaaaaaaaatgttatcaAAGAAAATGACATTTTTGagtgtttttttaaatattaatagctACAATCATTGACAAAACATATTTGGGTaacttgaaaaacttttttttctgtgttggtgtattgtactcaggtgaatatgatgcttgtgatgttactctgagtgtacagggtatatccataccgggcaagcttgaaaaaggtcgtaggttcgattcccaccgtggacaggcatatttttgaaaaacattgcTGCTTGCTAATTTGTCAAGAATTCAATGATTCCAAATTAAATGCAACAAAATTTTATTGTCTCGTTTGTGaaagaacgtttaaaattatctaGTATATGACTATAAAATAatgttacagatttttcatatctggcttgattcttgaaatattttgactgaaagcTTTGAGCTGTCTGTCATCTTGGATTTATTTAATGAGGACATGCGTATGATTGGAAATAAGTAGGCAAACATATTAGACAAACATTATTAGACAAACATTATAAGTATTAACATTTTTTGTGCCTTTTCTGGACGCCATGTTAATTTGTTGTTATTCCATGTTTATTATCTAAAGAACCTGTTTAAActtaacaataaaatacttgAAATTATGGTGCCATGACGATGATGGAAGACAACGTCTAATAGCATCAGGGAGAACACACAGAGCACATTTAAGTTTATAGAAGAAAATTACGGAACTGAAAGAAGCAGAAGATGATCAAAACGAGCAACTTCAGCAGAAAGGCCAGATACTATCAGAACTGGACAATAAGATATTTGAACTATTCACAAAACCTGAAGATTTGTAAGCGGATATATTACTTAATGTACATCACTGTACATCACTTAATGAATGGAATCTTGATGAGCTCCGAAAAGCAATGTGCAGAGAAACCAACATATTGGAAGTAGGCGAAACGAATCACCCAAATGAATTTTTTCCAGACCCACACACCGCAGTATTTGCCATTGGAAATGACAAGACTCACCAACAAGCCCCGTCAATCACCATCTAGATCAATAAAACGAACATGTGTTTACTGCAAAGGTTCCCATAGTCCAAATAACTGTGCTGTCATAACTGACAAGAAACACGAACACAACATGGTGCAAGATTCCAAATTATGTTTCAATTGTCGTAATGATAATTACATAGTGCCCCAGCGCAAGTCAAGAGGTCGGTGCAAAGCTTGTCATCGCAAACATCACACAGGCTTATGTTCAGTAGAAATTTCCCTACCTCCCTACTATAATAAACAAGACCCAACCCAAAGGTTCAAAACCAGTTAGTATAAACACCAACCCAACAGGACACATAGCAACACCCCCAACCATTTCACCCACAAACATTCCCACAAAAATTCAACATCTAAGTGAAAATAAACACAAGTCGAGATTGTTGAATACAGCTATGTACTGTATCTCCCCCACTTGAGTACCATGAGTCAATAGTTAGTGCACGCATTTTGCTTGACGAAGGGTCTCTTgaccagtagcgtagccaggAATGTGGGTCTAACAACTGAACGGGAGGAACCCTTTCCCTCTCCACATTCGGTGGGACAACCACGTCAGTAAGAAGAGTTGAAGTAGGTACCATCACATCAACGTGCAAACTCCTGTTGAGAAAACATTCCCATTGAAGCTATCATTGTTCCCAAAATGTCTGCTCTTTTACCAAATTTTACCAGCGTTGACTTGCATACAGCACTTTCATTTGCACACCCAATAATGAATGAACGCACCTTTGAAATTGATCTACTGATTGGAACGGATCATTATTAGGATGTCGCTGAAGACGAAGTAATTAATTAATGGTTCTGGTCCGACAGCGGCGAAGTCAAAGATTGGTTATCTCCTGTCAACAAGATGGTCACATCTCTGGGGTTGCTAGCAGCCAAGTTGGTCCATTTCTCCAGATTTCTGATGCATACAGTTGATGGATGGTGATACCTGAGGTTAGTAAATCTGAGGGGTTATCTTCTGTGCGACAGTATATTCAGTTATCAATAGATGTGAGAGTTTTGATTTCTGCAACCCGGCTGGCAACGTATAAAGTTTTATGTTGTTTTGTACTGTGAAGCCAGTGGAGATCGAAGCTGCCGTTACTTCTAAATTGGGATAAAGTCAATTTCGACgtccaaattcaaattcgtcTTTCTTACAGTACTTGCTGTCACAACGTTTAAAATGGTGGTGTTTAACCGGAATGTTTGGTTGAACCCTCAAATCACCTCTTGCTAACCCAAACTGAGGATCCCACAAACGAAGAAAATGTATCGACAACACCTGAAGATCCTTATAAACAGCCTGAATTTCATCATCTAATACCAATCTCTAAATTTAGTAGTCTCTCACCTCACGACTATTCAACGTCGCAGCATACGTTTTACGGTTTGTGAAAAACTATATCAAGAAAAAACAGAACGCACAGCAATTGACATACCATAACGAAATAATCTCGCGTCGAAAAGGGCACAACTAGTACCTTTAGTACGCTAACTTCGTCTATTCAAGAATAAATTTGGCCTTCTTCGCTCAAGTGGGAGAATACACACCGCGCCGCTGGCAGAATCAACGAAATTCTCAATATTCTACCACGGAAAAATGACCTCACGAAGCTCGTGATTTTCGAAATACACGTCCGCCAGTTGCACTCGGGTGTAAACGCAACACAGACGGCGCTACGTCAACGATATTGGATTCGTGCCGGACGATAACTCGTGAAGAAGATCATCAATATAATCCACCAGATCCACTACCATTGCCGAAAGCAAGACTTCAACAGATACGACCATTTGAAATCACAGGTGTTGATTTGATTTCAGTGAAGCATTATACATAAAAGAATCTGGGACAGGAAATAAAGCATGCCGCCACAAGAGCTGTACATCTCGAGATTGTTACGAACTTGTCGGTACCAACGTTTATCCCATACTTCCTCTTGTGCAGGAAAGACCAGGGTCtttctttctttgtctttttttttctttctttctgctGTGGCTGGTCACGCGCCACGCAGATTTTGCGTCGTAAAATGAAATTTGTCTGTGGGTAGGGTGGTAGAGGTGTGTGTTTGTCGTGTttggaaaattgaaaattcctcCACAAGaaggaagagcctgggaacgaggttgcgtttATCCTTGCATTCCGTAGATTTGCTGCTCGGAGAGCACTACCCAAATTAGTGATGTCATATAATGCTTTTACATGCAGTACTTGTCCACAGCGGAAGAAATTGTTTGAATCACCGATATAGTGAAAGAGACACTCAATAGACAGAATGCAGAATGGCAATTCATTCCAAAGAGAGCACCATGGTATGGCGGCTTTTACGAGAGATTGAGAAGACTGACGAAAACATGTTGGAGTAGCTTCAGTGAATTTAGTAATGCTACAAACCCTCGTTGTGTAGTCGAAGCCATTTTAAACGACAGACCATTGATATACGTGTGGGCAGACCAGCAACCACTTACACCATCACATCTCTTATATGTATGGCAGAAGAATAACAGCCCTACCGAACTTCGACGAAAATGTGGAGATCCAAAGAATCGCCGAGAGATTAGTGCTACTTCTACAATACTTTGACCAACGTTGGGGATAAGAGTACAGTATCTATAGAATAGGAGACGTTGTACAAGTACATGATGATAACTCTCGACCAACATGGAGATTAGCAGTGATCGAAAGTTTAATTCGAGGACGAGATAACGACCCtttacctgagtacataacaccaactaAATCTATATGTCAACCTATCTAAATCTAGAACTGTATCAATTTAGTCACCAGGAAATTtggtcaaaaaaattatttgtgtCAGTCACGCGAGTCATTGTTTAGCACATGGTTTAGCACAGCCATTTCATTACGACTGGCGTGACGAAGTCACACAATTTTAGGGTTAAAGACGATAATCATATATTGTAAGAGGACTCGGATACAGTGACTCGGATATagcgatattttttttatataaactttatttaactgttTGCCCCAAAAGCCATGCTTATCGAGGGGGCTCACGTGTAAAAAAAAAggatatataaaattatttacaccAAATAACacacaaataaacaaacaaaataaGACAGTGTTACAGAAAAGACAAGATACATAAACGCACAAAGCATTGCTAGGATAAGCGACAAGTATCCAAAATAAAACATATTGGACAGCACCGAACAATAAACGATTTTCATCAAAACTTAATTGAACAGAACCGTTCAATAAAAATTCAAGTTTTCCATTGTCGTTGCTCGTTAGCCATACTTTTCCACAGACTTGTGCAGCAGAGGTAAGAAGGTAAGAAGTTCATTACGTTGAGCAGCAAAACGAGGACATAATAAAATGTAATGTTTAACTGTTTCATTTTTATGGCAACATATATACATAAAGCCTTAAAGGAGAATTACAACAattaattatatacaaatagtCATTAAGCGCGCAAAAACCTAATCTTAGTCTTGTATGTAAAACAGATGCCTTCCTCGTAAGAGAAAAATTTAACCATTTATTATAACAAAGCGGATGAtaaatcttatttattttcaaCTTAAAGTTTGAAAGAGAAGTTGAATTTCTGATGTCAATATCAAGAGTATTCCACAACGAAATCGTGGAAGGAAAGAAtgatttcttaaatttttcagTTCTACACTTATATTGACTAATATTATGACCAGACCTTAACGGAATATAAGACCTTTCATTAACCAATTTTGGTAAAAGCTCAAGTATAGAGGAGAATAATTATAAACTATCTTATAAAAATAagataatttatgaatttttcttCTAATGCTCAACTCCTCCCAGGCCAGTTCTTGACGAAGACTATTCGAACTAGTAGTACCTTTAATGGCCCCAGTAACAACTCTAGCTGACTGATACTGAACACTTTCAAGTAACTCACTATTCCCGGCAGTACAATTATCCCAAATAATATCGCCATATTCCATTATTGGCCGAATAAAACTTTTGTATAAACAAGCGAGAGTTGATTTATCAATTTTGAACTTCAATGGTTTTAACATATTTAATCGTTGAGATGCCTTTTCATAAACTGATAAAATATGATTATTCCAATTAAGACATATTACTTTGAAAAGTCAAACCCAGATGAATGTGCGAGACGACTTCATCAATAGGACAGCCTCTCATTGAAAGTACCGGATGACATTCTTTCTCTTTTTTGTTGGAAAATGTCATAGATTTAGTTTGGAAAATGTCATAGATTTATTTTATAGCGATATTTGTATATCGCTATATCCGAGTCGCTGTATCCGAGTCCTCTTACAATATATGATTATCGTTTTTAACCCTAAAATTGTGTGACTTCGTCTTCGTCACGCCAGTCGTAATGAAATGACTGTGCTAAACCATGTGCTAAACAATGGGCTGACCTCCTACTCGAGCAAAGAGTATACTCTGAATCTAAATTTAGTTTGAAGATGACGGGCCTTCGCCTACGCAGAAGCCTTTACGGTTTTAATGTATTTACAGTAGTGTTtagatcatagaaataatagacatgcatagaatgcgtactcctatcttttctcagtaaaaattttgtctccacaaaaaggcggatttataagggcattttggctagtcccagactcctgCGGCAAGGAATTTCGTGCGGTTGCAGGGAGTGCggattttttttcaacaaagttttcAAAACTAACAATAATATAGagacttgaagtggaaaaaaagttttttaaaagagaaaaacccattccagtggggtttttacgaaaagcaatagttctgaacagaatatatacagaatcgtcgtttgaaaatacattttcaacgttgttgtgcaagctaAAACATGTTTTTATACGAAAGATCcagacaaactcaaactcaatacTAAGGTATtttctaaaaatatttcagctgttttataatataaatggtgtttggtaatctttttaaactttcgCACCTTActacttttttatatatttttacgttgcttgagcttgaggcaacgcttttgaaaccatagttttcaaCGATTATTAGGGACCgtttatcgacaactaaatatttttgtttcaagaacatgaaaacacttcgttttatagattgaagaaaaacgaaacccgacgaacTATCATTTCCTAGTTTAATCAAATATTGGCAAAGCAGTTACTGCTCTGAACGAGCAGGcacaaattatataaaaattataaattatattttaatacgCGAAACTAGTTTGTTTTTCAAgactgcacgattttcaccttTTTGTCAataactgcacatttgctttgagcctttaaaatttcaaatatatccccaaactacaaattagacaacaagacaaagcgttttgacgatgaaaacttagttttagctttgtttatactttgtagtttgcactcctgctcaaattcaacatggcggatttataagggcatttttgttttcaatttggacaccggtcacgtgaccaagcacgcattctaggtctaatatttctatgattTAGATCTATATTTAGTGGGCTCAGAGCGAGGTTTACAACATCCCTTAGACCCTAATGCAGATTTGTAAGCGTGTTGCTTGATTGGCTTGCTCAAGAATCACAAATATACTGTTGTCTCCCTCATTCTATTTACAAAATCGGTATGTCGGTAATCCCTCACGCGATTTATATGGTCTATGGAACTATTTTCTGTGTTTTCATGTGTTGTGGTAAAGGTTAAAAAACTGCTGATTGCATGCTCTTAGGATATTTTCTGTATTGTCTTAACCCTCGTGGCTTCAAACACTTCCTACATGAATATGGAAAATTACAAAACTAGAAGACAAGTGGGAGTGGCTGCACACCCTCCCCGCTCACCTGTTATACCGCTTTGCCATTGAACACAACACTTTAAAAAGTATTGAATGATCGATTGCATGATTgaataattaattgattaattcATTGCATGATTGATTGACAGGTTGTGGCAACTCTAAACTGAGTGAAGATCTGTATGATGTTGGCTATCATTCGTTGGTTAATATGGATATCTCTGAAGTAGTCATTAAACAAATGAATGCAAGAAACAATGCAAAACGTCCGGAAATGCAGTTCATGAAAATGGATTTGCTAGATATGAAATTTGATAGTGAAAGTTTCCAAGTTGTACTGGATAAAGGAACGTTAGATGCAATTTTCACCAGTGATGATAAGAAGATAGCTGAAAATGTTGAGAAGATGCTTGGGGAGATTACACGAGTCCTGAAAGTTGGTGGCCGATATATATGTGTATCTTTGGCTCAAGAGCATATCGTTAACATGCTGCTGGAGTATTTCCCAAATTTGAGCTGGTTCATTCGAGTTCACACAGTGGAAACACCGTCAAATGCATCTCCATTGCCTGTATTTGCATTCGTGTTTACAAAAACTAGGCCAAAACCTGACATATCAATAATAATGCCCCAGATATTGGAGATAGTAACTGATTCCTCTGAGAAAATTACTAGATTGGACAGTGTGGAAAAACTACATCAATCTATTCAAGCAGTTCAAGAATATGCCTTAGTTAAGAAACATTTGGAAACTCTTCATCCAGGAGACGATTTCCAGATTGATTTGTGGGCAGCTGATAACACCACAGACCCTAGGTATACTGTAACAATTGTTGATTTGAAACCTTCAAAGTCTCTTGCAGGAAAATTTGCTATTTTCATTGTTCCCCAAGGCCGAGAACATGAATGGATGTTTTCAATCAAAGAAGGTCAGAAGCAACTAGCTAACTCGGCAAGTTTCGAGCGACTTGTCATTGTAGCCCTTAATAGAGGTCATTCATATGAAAGTATTAATAAGATTAAAGAGGAATTATCTGGTAAAGTTATGGAATTCGCCCAGAGTGGCGTTAATTCAGCTTCCCAAGTACCTTTTCTCTCAATCGGTGATGATGTTGGCCATCGGAAGGTTGTCCATCGTGGTAGTTCAACATATACTGGCGACTATGTCATTGAAGATGTGGAAATTGATCGTGATGAAATGTTTCGTCATCTGGTCTTTCTCTCCAATAAGAGTGTTGTGCAGTCGGAAGCAAAGTTATGTCAAGTTGTGAAGCAGGCACAAAGCAAGTCAAGTAAAAAGAAAAAGAATGCTAAGAAGACCAAACCATTGAATGTTGACTTGTCGTACCTAGCATGCCAACACCATCAAGCAATCGTAGCTGGTTTTGCTTTACTGGAGAAGAATCAAAGTGATGATGTGCAACTACTTTTGATTGGCCTCGGTGGTGGAAGCTTGCCAATGTTCATCTACACTCATTTTCCTCGCATTTATACAACGGTAGCTGAACTTGATCCAGATATTGTTGATGTGGCGAAGAATTGGTTTGGTTTTCAAGAAAGTGAAAGAATGACGTTGATTGTTGATGATGGTCTGGAAGTTTTGAAAGAAAACTCAAAGAACTATGACATAGTTGTTTTTGATATTGATTCAAAAGATACATGCAAGGGTCTGAGTTGTCCTCCAGCTGTGTTTGTCGATAAAGAAACTTTGAAATGTGTGAAAGCGATGTTGTTTCCTGGTGGATTGTTCTTTCTGAATCTTGTGTGTAGAGATCAAGAGAGAAATGATGAAGTAATAAAGTCTATCCATCAAATGTTTCCTGCAGTTTGCAAAATAGATATTGAAAATGAAGTCAATGAAGTCTTGATCTGTAGTGATTCAAAGATGACAACAGAACTGTCCAAGGTCACAAAGGGTGGAAGAAAGTTGCAGGAACAGATTGTAGCAGTAAGCCCGTCATCAAATGTTCAATTGGCATCTTTTCTGGAAAACCTAAAATTATTTAGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N6R0	eEF1A lysine and N-terminal methyltransferase OS=Homo sapiens OX=9606 GN=METTL13 PE=1 SV=1
Q91YR5	eEF1A lysine and N-terminal methyltransferase OS=Mus musculus OX=10090 GN=Mettl13 PE=1 SV=1
A5PK19	eEF1A lysine and N-terminal methyltransferase OS=Bos taurus OX=9913 GN=METTL13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006733 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08241 all species →	Methyltransf_11	Methyltransferase domain	Domain	Interproscan
PF01564 all species →	Spermine_synth	Spermine/spermidine synthase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR013216 all species →	Domain	Methyltransferase type 11	Interproscan
IPR051419 all species →	Family	Lysine/N-terminal Methyltransferase Superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12176 all species →	SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25166	EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase	EC:2.1.1.-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4006015.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

13TPM > 0

4Conditions

5.6Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	1.39	5.59
apical branchlet · Temperature treatment at T0	6	4	0.39	1.77
apical branchlet · Temperature treatment at T25	5	2	0.19	0.85
apical branchlet · Control at T0	4	2	0.25	0.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	5.59
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.31
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.04
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.19
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.19
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.77
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.29
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.13
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.13
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.85
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.09
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.92
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.07
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.