Genomic Location: not available for this species
NR annotation: CAB4006388.1, rabenosyn-5-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4006388.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q80Y56 | Rabenosyn-5 OS=Mus musculus OX=10090 GN=Rbsn PE=1 SV=1 |
| Q9H1K0 | Rabenosyn-5 OS=Homo sapiens OX=9606 GN=RBSN PE=1 SV=2 |
| P34756 | 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FAB1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006405 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01363 all species → | FYVE | FYVE zinc finger | Domain | Interproscan |
| PF11464 all species → | Rbsn | Rabenosyn Rab binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017455 all species → | Domain | Zinc finger, FYVE-related | Interproscan |
| IPR036531 all species → | Homologous_superfamily | Rabenosyn, Rab binding domain superfamily | Interproscan |
| IPR000306 all species → | Domain | FYVE zinc finger | Interproscan |
| IPR052727 all species → | Family | Rab4/Rab5 effector domain-containing protein | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR021565 all species → | Domain | Rabenosyn, Rab binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13510 all species → | FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12481 | RBSN, ZFYVE20; rabenosyn-5 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB4006388.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 16.63 | 38.21 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 5.26 | 11.70 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 1.67 | 5.39 | |
| apical branchlet · Control at T0 | 4 | 2 | 5.96 | 19.10 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
