Genomic Location: not available for this species
NR annotation: CAB4006406.1, metal transporter CNNM4-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4006407.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5U2P1 | Metal transporter CNNM2 OS=Rattus norvegicus OX=10116 GN=Cnnm2 PE=2 SV=1 |
| Q9H8M5 | Metal transporter CNNM2 OS=Homo sapiens OX=9606 GN=CNNM2 PE=1 SV=2 |
| Q3TWN3 | Metal transporter CNNM2 OS=Mus musculus OX=10090 GN=Cnnm2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001932 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01595 all species → | CNNM | Cyclin M transmembrane N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044751 all species → | Domain | Ion transporter-like, CBS domain | Interproscan |
| IPR046342 all species → | Homologous_superfamily | CBS domain superfamily | Interproscan |
| IPR002550 all species → | Domain | CNNM, transmembrane domain | Interproscan |
| IPR000644 all species → | Domain | CBS domain | Interproscan |
| IPR045095 all species → | Family | Ancient conserved domain protein family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12064 all species → | METAL TRANSPORTER CNNM | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006810 all species → | Biological Process | transport | Interproscan |
| GO:0010960 all species → | Biological Process | magnesium ion homeostasis | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0030026 all species → | Biological Process | intracellular manganese ion homeostasis | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16302 | CNNM; metal transporter CNNM | - | Transporters | ko02000 | deepkoala |
Transcript abundance of CAB4006407.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
