Genomic Location: not available for this species
NR annotation: CAB4006592.1, mpv17 2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4006592.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q54XX9 | PXMP2/4 family protein 2 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278529 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001094 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04117 all species → | Mpv17_PMP22 | Mpv17 / PMP22 family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007248 all species → | Family | Mpv17/PMP22 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11266 all species → | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0034614 all species → | Biological Process | cellular response to reactive oxygen species | Interproscan |
| GO:0061668 all species → | Biological Process | mitochondrial ribosome assembly | Interproscan |
CAB4006592.1.Transcript abundance of CAB4006592.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
