Genomic Location: not available for this species
NR annotation: CAB4006683.1, Mediator of RNA polymerase II transcription subunit 6 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4006683.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3SZY9 | Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=MED6 PE=2 SV=1 |
| Q5RD94 | Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN=MED6 PE=2 SV=1 |
| O75586 | Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens OX=9606 GN=MED6 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007101 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04934 all species → | Med6 | MED6 mediator sub complex component | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016820 all species → | Family | Mediator complex, subunit Med6, metazoa/plant | Interproscan |
| IPR007018 all species → | Family | Mediator complex, subunit Med6 | Interproscan |
| IPR038566 all species → | Homologous_superfamily | Mediator complex, subunit Med6 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13104 all species → | MED-6-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003712 all species → | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016592 all species → | Cellular Component | mediator complex | Interproscan |
| GO:0003713 all species → | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0070847 all species → | Cellular Component | core mediator complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15128 | MED6; mediator of RNA polymerase II transcription subunit 6 | - | Transcription machinery | ko03021 | deepkoala |
Transcript abundance of CAB4006683.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
