Genomic Location: not available for this species
NR annotation: CAB4006821.1, DNA RNA-binding KIN17-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4006821.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O60870 | DNA/RNA-binding protein KIN17 OS=Homo sapiens OX=9606 GN=KIN PE=1 SV=2 |
| Q8K339 | DNA/RNA-binding protein KIN17 OS=Mus musculus OX=10090 GN=Kin PE=1 SV=1 |
| Q9ZVU5 | KIN17-like protein OS=Arabidopsis thaliana OX=3702 GN=KIN17 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003918 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10357 all species → | Kin17_mid | Domain of Kin17 curved DNA-binding protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR038254 all species → | Homologous_superfamily | DNA/RNA-binding protein KIN17, WH-like domain superfamily | Interproscan |
| IPR019447 all species → | Domain | DNA/RNA-binding protein Kin17, WH-like domain | Interproscan |
| IPR037321 all species → | Family | KIN17-like protein | Interproscan |
| IPR036236 all species → | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12805 all species → | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003690 all species → | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0006974 all species → | Biological Process | DNA damage response | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13102 | KIN; DNA/RNA-binding protein KIN17 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of CAB4006821.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
