Genomic Location: not available for this species
NR annotation: CAB4006865.1, ubiquitin carboxyl-terminal hydrolase 47-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4006865.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8BY87 | Ubiquitin carboxyl-terminal hydrolase 47 OS=Mus musculus OX=10090 GN=Usp47 PE=1 SV=2 |
| A1A5G2 | Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus tropicalis OX=8364 GN=usp47 PE=2 SV=1 |
| E1C1R4 | Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus OX=9031 GN=USP47 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003814 (this species only) |
| Ubiquitin family | DUB|USP|USP · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00443 all species → | UCH | Ubiquitin carboxyl-terminal hydrolase | Family | Interproscan |
| PF19718 all species → | USP47_C | Ubiquitin carboxyl-terminal hydrolase 47 C-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR028889 all species → | Domain | Ubiquitin specific protease domain | Interproscan |
| IPR050164 all species → | Family | Ubiquitin carboxyl-terminal hydrolases | Interproscan |
| IPR018200 all species → | Conserved_site | Ubiquitin specific protease, conserved site | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR001394 all species → | Domain | Peptidase C19, ubiquitin carboxyl-terminal hydrolase | Interproscan |
| IPR045578 all species → | Domain | Ubiquitin carboxyl-terminal hydrolase 47, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24006 all species → | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004843 all species → | Molecular Function | cysteine-type deubiquitinase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0016579 all species → | Biological Process | protein deubiquitination | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11838 | USP7, UBP15; ubiquitin carboxyl-terminal hydrolase 7 | EC:3.4.19.12 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of CAB4006865.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
