Genomic Location: not available for this species
NR annotation: CAB4007307.1, ribosome biogenesis BRX1 homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4007307.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8UVY2 | Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis OX=8355 GN=brix1 PE=2 SV=1 |
| Q4QQT6 | Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus OX=10116 GN=Brix1 PE=2 SV=1 |
| Q3SZZ0 | Ribosome biogenesis protein BRX1 homolog OS=Bos taurus OX=9913 GN=BRIX1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004742 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04427 all species → | Brix | Brix domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR026532 all species → | Family | Ribosome biogenesis protein BRX1 | Interproscan |
| IPR007109 all species → | Domain | Brix domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13634 all species → | RIBOSOME BIOGENESIS PROTEIN BRIX | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000027 all species → | Biological Process | ribosomal large subunit assembly | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0019843 all species → | Molecular Function | rRNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14820 | BRX1, BRIX1; ribosome biogenesis protein BRX1 | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of CAB4007307.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
