Genomic Location: pcla8_s005912:24333...26970
NR annotation: CAB4007404.1, zinc finger 420-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
| CDS |
| PACLA_8A060538 |
| Transcript |
| rna-PACLA_8A060538 |
| Protein |
| CAB4007404.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013351 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00096 all species → | zf-C2H2 | Zinc finger, C2H2 type | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR036236 all species → | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR050169 all species → | Family | Krueppel C2H2-type zinc-finger | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23232 all species → | KRAB DOMAIN C2H2 ZINC FINGER | Interproscan |
CAB4007404.1 in Paramuricea clavata.CAB4007404.1.Transcript abundance of CAB4007404.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 1 | 0.82 | 4.90 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
