Genomic Location: not available for this species
NR annotation: CAB4007769.1, Hepatocyte growth factor-regulated tyrosine kinase substrate [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4007769.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q0V8S0 | Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus OX=9913 GN=HGS PE=2 SV=1 |
| Q99LI8 | Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus OX=10090 GN=Hgs PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003104 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12210 all species → | Hrs_helical | Hepatocyte growth factor-regulated tyrosine kinase substrate | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017073 all species → | Family | Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27 | Interproscan |
| IPR024641 all species → | Domain | Hepatocyte growth factor-regulated tyrosine kinase substrate, helical domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46275 all species → | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005769 all species → | Cellular Component | early endosome | Interproscan |
| GO:0031623 all species → | Biological Process | receptor internalization | Interproscan |
| GO:0032456 all species → | Biological Process | endocytic recycling | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12182 | HGS, HRS, VPS27; hepatocyte growth factor-regulated tyrosine kinase substrate | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB4007769.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
