Genomic Location: not available for this species
NR annotation: CAB4007956.1, tumor necrosis factor receptor superfamily member 4-like isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4007956.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000268 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00020 all species → | TNFR_c6 | TNFR/NGFR cysteine-rich region | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001368 all species → | Domain | TNFR/NGFR cysteine-rich region | Interproscan |
| IPR047526 all species → | Family | Tumor necrosis factor receptor superfamily member 19/27/EDAR | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12120 all species → | TNFR-CYS DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0038023 all species → | Molecular Function | signaling receptor activity | Interproscan |
| GO:0043123 all species → | Biological Process | positive regulation of canonical NF-kappaB signal transduction | Interproscan |
| GO:0046330 all species → | Biological Process | positive regulation of JNK cascade | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05152 | TNFRSF14, HVEM, CD270; tumor necrosis factor receptor superfamily member 14 | - | CD molecules | ko04090 | deepkoala |
Transcript abundance of CAB4007956.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
