Genomic Location: not available for this species
NR annotation: CAB4008123.1, SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4008123.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| B4F769 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Rattus norvegicus OX=10116 GN=Smarcal1 PE=2 SV=1 |
| Q0P4U8 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus tropicalis OX=8364 GN=smarcal1 PE=2 SV=1 |
| Q8BJL0 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Mus musculus OX=10090 GN=Smarcal1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001392 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00271 all species → | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00176 all species → | SNF2-rel_dom | SNF2-related domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001650 all species → | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR038718 all species → | Homologous_superfamily | SNF2-like, N-terminal domain superfamily | Interproscan |
| IPR000330 all species → | Domain | SNF2, N-terminal | Interproscan |
| IPR049730 all species → | Domain | SNF2/RAD5-like, C-terminal helicase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45766 all species → | DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0031297 all species → | Biological Process | replication fork processing | Interproscan |
| GO:0048478 all species → | Biological Process | obsolete replication fork protection | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0140658 all species → | Molecular Function | ATP-dependent chromatin remodeler activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14440 | SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 | EC:5.6.2.- | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB4008123.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 1.81 | 3.79 | |
| apical branchlet · Temperature treatment at T0 | 6 | 2 | 0.42 | 1.67 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.30 | 1.51 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.08 | 0.33 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
