Gene detail

Detailed information of CAB4008220.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4008220.1, ribosomal L27a [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4008220.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48160	Large ribosomal subunit protein uL15 OS=Dictyostelium discoideum OX=44689 GN=rpl27a PE=3 SV=1
P46776	Large ribosomal subunit protein uL15 OS=Homo sapiens OX=9606 GN=RPL27A PE=1 SV=2
Q5REY2	Large ribosomal subunit protein uL15 OS=Pongo abelii OX=9601 GN=RPL27A PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006093 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00828 all species →	Ribosomal_L27A	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027386 all species →	Homologous_superfamily	Ribosomal uL15, N-terminal	Interproscan
IPR030878 all species →	Family	Large ribosomal subunit protein uL15	Interproscan
IPR001196 all species →	Conserved_site	Large ribosomal subunit protein uL15, conserved site	Interproscan
IPR021131 all species →	Domain	Large ribosomal subunit protein uL15/eL18	Interproscan
IPR036227 all species →	Homologous_superfamily	Large ribosomal subunit protein uL15/eL18 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11721 all species →	60S RIBOSOMAL PROTEIN L27A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02900	RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4008220.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

21TPM > 0

4Conditions

2,628.8Max TPM

1,069.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	6	1,264.48	2,628.77
apical branchlet · Temperature treatment at T0	6	6	1,139.32	1,866.02
apical branchlet · Temperature treatment at T25	5	5	770.31	1,767.87
apical branchlet · Control at T0	4	4	1,046.41	1,488.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2,628.77
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1,340.52
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1,198.85
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	930.16
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	820.40
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	668.18
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1,866.02
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1,274.09
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1,126.46
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	909.78
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	849.51
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	810.03
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	1,767.87
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	675.49
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	579.14
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	438.05
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	390.98
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1,488.61
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1,458.59
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	842.96
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	395.47

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.