Gene detail

Detailed information of CAB4008256.1 in Paramuricea clavata

Genomic Location: pcla8_s006205:14129...18144
NR annotation: CAB4008256.1, Solute carrier family 25 member 36 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A042878

GAAATGTATCTGTTGCTGTTCGCCGATTAAACGCAAACGACGGTACAATGTGTAGAAAAATGAGAGAATGTTTCACCCACGGCTCTCTCCTATATTTGAACCAGAAGTCCTTATAAATTCCTTATAAATACTTTATAGTTCACTCAGTGGTCGCACCTCCCCTACGCCCCCTCCCACGAACAATGCGTGCAGCACTCGCGTGGAAAACCATACAGTATAAACCTGAAGAAGATATGAAATGTCTATCAGCGAGAAGCcgaaaagaaaacaattttcaatAGTAAATCACTTTGTTGCCGGAGGTTTAGGGGGAGCAGTTGGCGCTGTTTTAACATCCCCGTTTGATGTGATTAAAACAAGACTGCAATCGTCTGGATACCGTTTAGAAAAAGTGAATTATGGCAATATTAATTTGGCAGGTTCAAACCAAGCGGTTATCAGCACTCAATCTAAACCATATAGTGCTGTGTTCTCGTACATGCGGTACATGATAAAATCCGAAGGGTGGCCATCGCTTTTTCGTGGTTTGGAGCTACATTTACTCGGCATAGCGCCATCAAGGGCTATCTACTTCGCAGTCTATTCAaacagcaaacatttcttgttGTCAACAGGAAACTTGAAAGATGACAGCGCAATTTTGCCTGTAGCTTCTTCGGTTGTCGCTGGCTTTACAACATGTACTATGACAAATCCCGTGTGGTTTTTAAAAACGAGACTGCAGTTAGAATGCTCGCGTTATGGGGGCAATCAGAAAGGTTTATGGAGGAcaatacagaatatttataagaAAGAGGGCATAAGGAAGTTTTATTGTGGCCTAACTGCTTCATATTTGGGAATTGGCGAGACGGTTATAAATTTCCTTATTTATGAGCAAATGAAAATTAAGATCAACAAGTTTTATAATAGAGACAGCAGTAAATCGTTTTATTTCTCCACTTACGTCATAGCATCAACCCTATCGAAGTCAACGGCAGCTGTCATTGGTTACCCGCACGAGGTGTTGCGAACGAGGTTGCGGCAGCAGTCTAACGAGGTCCTAGGCAGAGAGAGGTATAGTTCCGTAACGCAAACAGCAAGGATGATCCTAAAGGAGGAGGGTTGGATAGCATTTTACGGTGGACTGTGGACGCACTTGCTACGACAAGTGCCCAACACGGTTATACTGCTTCTAACATATGAAGCGATAATTCATTATTTAGAACATTGATTGTTACACTAATGCTGGACATTTCTAACTCATAATTACTTTTTATTAGTTAGCTATCAGTGATTGCCCAATCATGCCACTGTTGGATAGTCATAATACATCCTTCCGGAAAGTGCTCGTTCTTGGCTATGGAGCTTTTGTTTTTGTGATCGAGGTATTGGGTTAAGAGCCCATTATCCTGTTACAGATGACACATTTACAAAACCATACAGTTATATCAGTGAATATGAATTAGATCTATTAATGATTGTGTCATCAGCAATAGGAATTAATGACTGCCTCTAACATCAATGTCTCTTGAAATCATGGAAATAAGGCTCTATAACCATGGCTGGTACTGGTTGGTACTTTCCAGAAGGCTGTATTGGCTCGATTCTGATCCCATAAAGTGTTCAAAGAAgttgaattattattattattattacaagcTTATACAGTATAGCACTTATAACACATAGATCTAAATGCTTTACATTCACTAAAACTATAGTAAaaataaattacaaattacatcTTAAAACCTAAGTCACTAGGCATAATTCATTTTACATTATAACCAAAAAACTGGCAATAAAAATAACTAACAgttttttcaataaaatattttcaattaaatATTTGCATTAAAAAGTTTCACACTCAGCCACAAAGCTTggcaaagttaaaaaagtttttCCATAATAATTCATTACATACAATTGACAAATTTGAACATTCTCTATGGATAACACAACAGTCTGCTCCAACTATTTGGTCATTTACTATGCCAACTGACTTGTCGCTCATACATATAGCCTCAGTATATTTtgtcttttaattaaaaaagcaCAAATTGGTCTTTCCAGAAAAGATCTGCACTCCcctcacagaggaaatttctgaaGTGGAGGGGggatttgtttctgataatagtacaTCCGAAGGGGATAGGAGGGTTAACTTTCTGTGGGGAAGCTATGGATagtttctggaatgacccagttatttatttatattgaattatCTAAGATGCTAAGTACTGTTgagtttcttgtttttgtagtgttttatttatttgttgGGTTAGATATAACAAGTAAGAAAAGtacatgtaaataaatataatatttatcaacatgcaGAGACACTATATAGACTTCAGTACAAAGGTTTCTGCTAGACTTaatgtttgaaataaaataatttttacgaAAAAAATGATTGTATGCTAATATTTATTCACAGTTAGAATAATTGTGTGATTGAATAATTGCTTATTTCATAAATTAACCCTTCAAGTTACAATGCAatccactttattattttactctgttaaCACCGGACGATTTACTAGTCAAGGTgagagcactggtgctcaatgggttaaccaataTACCCTTTAATTTGGAAAGTACATCACCTTGGCtatatagagcctcgttttcatgtataTGACATATGTTAATTTCTAGCCAAGCATTACAATCACCAGAATgagctctatagccaaggtgacatacCGGACCACCGGTACCACATATTAACCATCCACTCGTATAGAATCCACTGAACATTGTTGAAGTATTTTAATCTATGTGACACATTGGTATGCAACACAACTAAATGGGTTAAATTAAGGGATCATTATATTATactgaaatatatattaaattatattatctaacatatattaaattgaaaattattaattatttaatattaacccattgagccgcaatgcaccctaattatttttttacttgtctaacatcagacgattttactaattgtcaatggggaagctctgcagcttaatgggtttaaCCAAAAATGtatctagttaacccattgaggcacatgcgccctacttttttttttacttgtctaacgccacacaattttacttgtcaatggggaagctctgcagcttaattaTTCACTTCCCTAAATCTCATTAACTTGTCTTTTTGTGAGGTTTACGAACCTTCACAGTCTCTGGCAAAGTCATTACAAATATAGCAGCTAGTATAGCACCAATACCAAAACTAAGCATAGGAATTCTCTTATCATACACCTCCAACCCTATAACCAGTGGGGCCAAAACACCACCTATACTAGCTGCGGTTGAAAATATACCCATGGAAAAGCTCCGTACAGATGCACCAAATTGTTCTGCTGAAAATATATAGATTATGTTGTAGCAAGCTGCAACAGCAAATTTTCCAAGTAAGGCCAATGCCATGATGAAGAAACCACCTTGTGACTGGTCACCGCCCTGTAACCATCCACATACCAAACACGCTAAGGAACCAAACAGAGCAAGGGTAAGTAATGGTATTCTTCTGCCAGATTTTATAATCCACATGCTCAGTAACAAAGCAGGGATCTCAACTAATCCACATAAGCCGAAACTCAAGTATTTGTTAGTACTCAGGCTGCCAGAGAGAAATGATAAACCAGAGTACATCATTGAAAGGAATAGCCAAATTACAGACAAAATTAATGCCTTTTTAACATAACCTGGTCGTGCAAATACACTTGTGTTATTTTGGTTAGTTCTCAGGTTAGCCTTGGGCACATCGTTGGACAGCTTTTCAAGCAATGTCTCCGAGATGTCGGCTCCATTTGTTTTTGCAATTTCTCTCAACAGCTGCTTGCTCTCTTCAATTCGCCCATTTTCCACCAGCCACTGAGGGGATTCGCAAAGACCATTTCGCAAAAGAAACGTTGAACAAAATACAATCGGAAATGACACTGTCATCGTCAGATATCGCCAGTCTCGAATGAAATAGGCAATCAAACTCAATATTACATAGCCAATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LZB3	Solute carrier family 25 member 33 OS=Bos taurus OX=9913 GN=SLC25A33 PE=2 SV=1
Q9BSK2	Solute carrier family 25 member 33 OS=Homo sapiens OX=9606 GN=SLC25A33 PE=1 SV=1
Q5ZKP7	Solute carrier family 25 member 36 OS=Gallus gallus OX=9031 GN=SLC25A36 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001775 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR049562 all species →	Family	Solute carrier family 25 member 33/36-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45829 all species →	MITOCHONDRIAL CARRIER PROTEIN RIM2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0000002 all species →	Biological Process	mitochondrial genome maintenance	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0015218 all species →	Molecular Function	pyrimidine nucleotide transmembrane transporter activity	Interproscan
GO:1990519 all species →	Biological Process	pyrimidine nucleotide import into mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15116	SLC25A33_36, RIM2; solute carrier family 25, member 33/36	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4008256.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

18TPM > 0

4Conditions

32.2Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	6	6.76	12.11
apical branchlet · Temperature treatment at T0	6	5	4.35	9.65
apical branchlet · Temperature treatment at T25	5	4	9.97	32.19
apical branchlet · Control at T0	4	3	3.67	8.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	12.11
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	8.01
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	7.83
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	4.85
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	3.99
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	3.76
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	9.65
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	9.57
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	3.62
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.11
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.13
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	32.19
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	11.02
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	3.60
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	3.02
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	8.97
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	3.04
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	2.66
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.