Genomic Location: not available for this species
NR annotation: CAB4008619.1, serine threonine- phosphatase 4 regulatory subunit 3A isoform X2, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4008619.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6P2K6 | Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Mus musculus OX=10090 GN=Ppp4r3a PE=1 SV=1 |
| Q6IN85 | Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens OX=9606 GN=PPP4R3A PE=1 SV=1 |
| Q6INN7 | Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus laevis OX=8355 GN=smek1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005494 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04802 all species → | PP4R3 | Phosphatase 4 regulatory subunit 3 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR051137 all species → | Family | Serine/threonine-protein phosphatase 4 regulatory subunit 3 | Interproscan |
| IPR006887 all species → | Domain | Serine/threonine-protein phosphatase 4 regulatory subunit 3-like, central domain | Interproscan |
| IPR010916 all species → | Conserved_site | TonB box, conserved site | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23318 all species → | ATP SYNTHASE GAMMA-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005654 all species → | Cellular Component | nucleoplasm | Interproscan |
| GO:0006470 all species → | Biological Process | protein dephosphorylation | Interproscan |
| GO:0006974 all species → | Biological Process | DNA damage response | Interproscan |
| GO:0030289 all species → | Cellular Component | protein phosphatase 4 complex | Interproscan |
| GO:0072542 all species → | Molecular Function | protein phosphatase activator activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17491 | SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of CAB4008619.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 39.35 | 91.44 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 16.26 | 46.62 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 10.95 | 22.08 | |
| apical branchlet · Control at T0 | 4 | 2 | 11.61 | 33.89 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
