Genomic Location: not available for this species
NR annotation: CAB4008720.1, vacuolar sorting-associated 54-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4008720.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9P1Q0 | Vacuolar protein sorting-associated protein 54 OS=Homo sapiens OX=9606 GN=VPS54 PE=1 SV=2 |
| Q5SPW0 | Vacuolar protein sorting-associated protein 54 OS=Mus musculus OX=10090 GN=Vps54 PE=1 SV=1 |
| Q9JMK8 | Vacuolar protein sorting-associated protein 54 OS=Rattus norvegicus OX=10116 GN=Vps54 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004663 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07928 all species → | Vps54 | Vps54-like protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012501 all species → | Domain | Vacuolar protein sorting-associated protein 54, C-terminal | Interproscan |
| IPR039745 all species → | Family | Vacuolar protein sorting-associated protein 54 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12965 all species → | VACUOLAR PROTEIN SORTING 54 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0042147 all species → | Biological Process | retrograde transport, endosome to Golgi | Interproscan |
| GO:0000938 all species → | Cellular Component | GARP complex | Interproscan |
| GO:0006896 all species → | Biological Process | Golgi to vacuole transport | Interproscan |
| GO:0019905 all species → | Molecular Function | syntaxin binding | Interproscan |
CAB4008720.1.Transcript abundance of CAB4008720.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
