Genomic Location: not available for this species
NR annotation: CAB4008828.1, phosphoglucomutase-2-like isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4008828.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5R979 | Glucose 1,6-bisphosphate synthase OS=Pongo abelii OX=9601 GN=PGM2L1 PE=2 SV=1 |
| Q6PCE3 | Glucose 1,6-bisphosphate synthase OS=Homo sapiens OX=9606 GN=PGM2L1 PE=1 SV=3 |
| Q5RFI8 | Phosphopentomutase OS=Pongo abelii OX=9601 GN=PGM2 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003003 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02878 all species → | PGM_PMM_I | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | Domain | Interproscan |
| PF02880 all species → | PGM_PMM_III | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | Domain | Interproscan |
| PF02879 all species → | PGM_PMM_II | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016055 all species → | Homologous_superfamily | Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III | Interproscan |
| IPR036900 all species → | Homologous_superfamily | Alpha-D-phosphohexomutase, C-terminal domain superfamily | Interproscan |
| IPR005844 all species → | Domain | Alpha-D-phosphohexomutase, alpha/beta/alpha domain I | Interproscan |
| IPR005846 all species → | Domain | Alpha-D-phosphohexomutase, alpha/beta/alpha domain III | Interproscan |
| IPR005841 all species → | Family | Alpha-D-phosphohexomutase superfamily | Interproscan |
| IPR005845 all species → | Domain | Alpha-D-phosphohexomutase, alpha/beta/alpha domain II | Interproscan |
| IPR016066 all species → | Conserved_site | Alpha-D-phosphohexomutase, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45745 all species → | PHOSPHOMANNOMUTASE 45A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0016868 all species → | Molecular Function | intramolecular phosphotransferase activity | Interproscan |
| GO:0071704 all species → | Biological Process | obsolete organic substance metabolic process | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006166 all species → | Biological Process | purine ribonucleoside salvage | Interproscan |
| GO:0008973 all species → | Molecular Function | phosphopentomutase activity | Interproscan |
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
CAB4008828.1.Transcript abundance of CAB4008828.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
