Genomic Location: not available for this species
NR annotation: CAB4008880.1, pyridoxamine 5 -phosphate oxidase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4008880.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q2S544 | Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salinibacter ruber (strain DSM 13855 / M31) OX=309807 GN=pdxH PE=3 SV=1 |
| Q8DLZ5 | Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1) OX=197221 GN=pdxH PE=3 SV=1 |
| Q0K7Z0 | Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=pdxH PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003704 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01243 all species → | Putative_PNPOx | Pyridoxamine 5'-phosphate oxidase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012349 all species → | Homologous_superfamily | FMN-binding split barrel | Interproscan |
| IPR011576 all species → | Domain | Pyridoxamine 5'-phosphate oxidase, putative | Interproscan |
| IPR000659 all species → | Family | Pyridoxamine 5'-phosphate oxidase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10851 all species → | PYRIDOXINE-5-PHOSPHATE OXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004733 all species → | Molecular Function | pyridoxamine phosphate oxidase activity | Interproscan |
| GO:0008615 all species → | Biological Process | pyridoxine biosynthetic process | Interproscan |
| GO:0010181 all species → | Molecular Function | FMN binding | Interproscan |
CAB4008880.1.Transcript abundance of CAB4008880.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
