Gene detail

Detailed information of CAB4009199.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4009199.1, complement C3-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4009199.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0ZZJ6	A.superbus venom factor 1 OS=Austrelaps superbus OX=29156 PE=1 SV=1
Q01833	Complement C3 OS=Naja naja OX=35670 GN=C3 PE=2 SV=1
Q91132	Cobra venom factor OS=Naja kaouthia OX=8649 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000840 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00207 all species →	A2M	Alpha-2-macroglobulin family	Family	Interproscan
PF17789 all species →	MG4	Macroglobulin domain MG4	Domain	Interproscan
PF17791 all species →	MG3	Macroglobulin domain MG3	Domain	Interproscan
PF17790 all species →	MG1	Macroglobulin domain MG1	Domain	Interproscan
PF07678 all species →	TED_complement	A-macroglobulin TED domain	Repeat	Interproscan
PF07703 all species →	A2M_BRD	Alpha-2-macroglobulin bait region domain	Domain	Interproscan
PF01835 all species →	MG2	MG2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001599 all species →	Domain	Alpha-2-macroglobulin	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR040839 all species →	Domain	Macroglobulin domain MG4	Interproscan
IPR041555 all species →	Domain	Macroglobulin domain MG3	Interproscan
IPR036595 all species →	Homologous_superfamily	Alpha-macroglobulin, receptor-binding domain superfamily	Interproscan
IPR011625 all species →	Domain	Alpha-2-macroglobulin, bait region domain	Interproscan
IPR041425 all species →	Domain	Complement C3/4/5, macroglobulin domain MG1	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011626 all species →	Domain	Alpha-macroglobulin-like, TED domain	Interproscan
IPR002890 all species →	Domain	Macroglobulin domain	Interproscan
IPR019742 all species →	Conserved_site	Alpha-2-macroglobulin, conserved site	Interproscan
IPR050473 all species →	Family	Alpha-2-macroglobulin/Complement system	Interproscan
IPR008930 all species →	Homologous_superfamily	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Interproscan
IPR047565 all species →	Conserved_site	Alpha-macroglobulin-like, thiol-ester bond-forming region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11412 all species →	MACROGLOBULIN / COMPLEMENT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004866 all species →	Molecular Function	endopeptidase inhibitor activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4009199.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4009199.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

21TPM > 0

4Conditions

583.7Max TPM

111.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	6	23.56	36.72
apical branchlet · Temperature treatment at T0	6	6	61.98	197.28
apical branchlet · Temperature treatment at T25	5	5	258.82	583.67
apical branchlet · Control at T0	4	4	133.98	386.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	36.72
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	28.05
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	26.60
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	23.61
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	16.73
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	9.62
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	197.28
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	56.53
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	42.71
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	34.48
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	25.04
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	15.86
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	583.67
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	296.49
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	217.65
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	173.30
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	23.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	386.56
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	81.84
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	56.60
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	10.92

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.