Genomic Location: not available for this species
NR annotation: CAB4009228.1, tropomodulin-1 isoform X1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4009228.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A0JNC0 | Tropomodulin-1 OS=Bos taurus OX=9913 GN=TMOD1 PE=2 SV=1 |
| P49813 | Tropomodulin-1 OS=Mus musculus OX=10090 GN=Tmod1 PE=1 SV=2 |
| P70567 | Tropomodulin-1 OS=Rattus norvegicus OX=10116 GN=Tmod1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002197 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03250 all species → | Tropomodulin | Tropomodulin | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| IPR004934 all species → | Family | Tropomodulin | Interproscan |
| IPR016135 all species → | Homologous_superfamily | Ubiquitin-conjugating enzyme/RWD-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10901 all species → | TROPOMODULIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005523 all species → | Molecular Function | tropomyosin binding | Interproscan |
| GO:0051694 all species → | Biological Process | pointed-end actin filament capping | Interproscan |
| GO:0005856 all species → | Cellular Component | cytoskeleton | Interproscan |
| GO:0007015 all species → | Biological Process | actin filament organization | Interproscan |
CAB4009228.1.Transcript abundance of CAB4009228.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
