Genomic Location: not available for this species
NR annotation: CAB4009388.1, breast cancer metastasis-suppressor 1 -A [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4009388.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q4V8V1 | Breast cancer metastasis-suppressor 1-like protein-A OS=Danio rerio OX=7955 GN=brms1la PE=2 SV=1 |
| Q6AZT4 | Breast cancer metastasis-suppressor 1-like protein OS=Xenopus laevis OX=8355 GN=brms1l PE=2 SV=1 |
| A4II71 | Breast cancer metastasis-suppressor 1-like protein OS=Xenopus tropicalis OX=8364 GN=brms1l PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003628 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08598 all species → | Sds3 | Sds3-like | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013907 all species → | Family | Sds3-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21964 all species → | BREAST CANCER METASTASIS-SUPPRESSOR 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000122 all species → | Biological Process | negative regulation of transcription by RNA polymerase II | Interproscan |
| GO:0042826 all species → | Molecular Function | histone deacetylase binding | Interproscan |
| GO:0070822 all species → | Cellular Component | Sin3-type complex | Interproscan |
CAB4009388.1.Transcript abundance of CAB4009388.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
