Genomic Location: not available for this species
NR annotation: CAB4009547.1, Serine threonine- phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4009547.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P36179 | Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit OS=Drosophila melanogaster OX=7227 GN=Pp2A-29B PE=1 SV=4 |
| Q32PI5 | Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus OX=9913 GN=PPP2R1A PE=1 SV=1 |
| P30153 | Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens OX=9606 GN=PPP2R1A PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005748 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02985 all species → | HEAT | HEAT repeat | Repeat | Interproscan |
| PF13646 all species → | HEAT_2 | HEAT repeats | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000357 all species → | Repeat | HEAT repeat | Interproscan |
| IPR051023 all species → | Family | Protein Phosphatase 2A Regulatory Subunit A | Interproscan |
| IPR021133 all species → | Repeat | HEAT, type 2 | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10648 all species → | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000159 all species → | Cellular Component | protein phosphatase type 2A complex | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006470 all species → | Biological Process | protein dephosphorylation | Interproscan |
| GO:0019888 all species → | Molecular Function | protein phosphatase regulator activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03456 | PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB4009547.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 79.75 | 143.78 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 45.34 | 110.09 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 35.95 | 68.02 | |
| apical branchlet · Control at T0 | 4 | 3 | 20.08 | 54.98 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
