Genomic Location: not available for this species
NR annotation: CAB4009650.1, RING finger 113A [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4009650.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O15541 | E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1 |
| Q67ER4 | E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1 |
| Q8IZP6 | RING finger protein 113B OS=Homo sapiens OX=9606 GN=RNF113B PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008046 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13920 all species → | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| PF00642 all species → | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR036855 all species → | Homologous_superfamily | Zinc finger, CCCH-type superfamily | Interproscan |
| IPR017907 all species → | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR000571 all species → | Domain | Zinc finger, CCCH-type | Interproscan |
| IPR039971 all species → | Family | Pre-mRNA-splicing factor CWC24-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12930 all species → | ZINC FINGER PROTEIN 183 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0005684 all species → | Cellular Component | U2-type spliceosomal complex | Interproscan |
| GO:0034247 all species → | Biological Process | snoRNA splicing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13127 | RNF113A, CWC24; RING finger protein 113A | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of CAB4009650.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 22.80 | 69.04 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 14.70 | 76.87 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.91 | 4.55 | |
| apical branchlet · Control at T0 | 4 | 1 | 1.06 | 4.24 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
