Gene detail

Detailed information of CAB4009698.1 in Paramuricea clavata

Genomic Location: pcla8_s006702:458...4057
NR annotation: CAB4009698.1, tetratricopeptide repeat, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

PACLA_8A016275

Transcript

rna-PACLA_8A016275

ATGACTAATCACTTTCAACTGGCAATTGAACACTACGAGAAAGCTTTGGAAATTGCAAAGGAGCATGAGTATAGTCAACAGAAATCAATGGCATTAGTTGGGTTAGGACATGCGCATAGAGAGGAAAATCAGTTTGAAACAGCAATTGAACACTATGAAAAAGCTTTGGAAATCGCAAAGGAGTATCAACACAAACAACAGGAAACACAGGGATTACTTGGGTTAGGATATGTGTATGGAGAGAACTATCAGTTTGAAATGGCTATTGAACAGTATGAGAAAGCTTGGGAAATTGCAAAGGATCATGAGTTTAAACAACAGGAAACACAGGCATTAGTTGGGTTGGGAGATGCGTATAGAGGGagcaatcagtttcaaaaggcAATTGAACACTACGAGAAAGCTTTGGAAATTGGAAGAAAGCGTGGATTTGAAGATCAATACAAAGAAACACAGATATTGCTTGGGTTAGGAGATGCACATAGCGGGAACGatcagtttcaaacggcaactGAACACTATGAGAAAGCCTTGGAAATTACGGAGGAGCATGGATATAAACAAGTGGAAATAGTGGCATTAATTAGGTTAGGAGGTGTCTGCAGAGGGAACAATCAGTTTGAAACAGCAATTGAACACTATAAGAAAGCTTTGGAATTTGCAAAGGAGTATGAATATAAACATCTGGAAACACTGGCATTAGTTGAGCTAGGATGTGCGTATAGAAGGAACAATCAGTTTGAAACAGCAATTGAACACTACGAGAACGCTGTGGAAATTGCAAGGCCACATAAATATAAACAACGGGAAACAGAAGCATTAGTTGGATTAGGACATACGTATAGAATTCAGAATTTGTTTCAAGAGGCTATTGAAAACTATAAGAAAGCTATAAAAATTGCAAAGGAGCATGAGTATAAACAACAGGAAACGGAGGCATTTGTTGGTTTAGGAGATGCGTATAGAATGAGCTATCAGTTTCAAATGGCAATTGAACACTATGAGAAGGCTTTGCAAATTGCAAGGCCACATGAGTATAAACAACGGGAAACAGAGGCATTAGTTGGATTAGGAGATACGTATAGAGTTAAGAATCAATTTCAAAAGGCGATTGAACATTACAAGAAAGCTTTGAAAATTGCAAAAGAGCATGGATATAATCAACAGGAAAGGCAGGCATTAGTTTGGTTAGGACATACTTATAGAGagaacaatcagtttcaaacggcaattgaACACTATGAGGAAGCTTTGGAAATTGCAAAGAAGCCTGAACCGCATGATAAATACCAAGAAACACAGGTATTACTTGGGTTAGGAGATGCGTATGATGGGAACAATCAGCTTCACAAGGCTATTGAACATTATAAGAATGCAttgaaaattgcaaacgatCATGAATATTTCCAACAGGAAGCAGAGGCATTTGTTCAGTTAGGAGATGCTTATAGAGAAAACGATCAGTTTCAAATGGCAATTGAACACTataagaaagcttttgaaattgcAATGAAGCATGAATATAAACAACTGGAAACAGAGGCTTTAGTTGGGTTAGGAGATGCGTATAGAATGAACAgtcagtttcaaacggcaattaaacACTATGAAAAAGCTCTGGAAATTGCAATGCGACATGAATATAGACAACAGGAAGCAGAGGCATTAGTTGGGTTAGGAGATGCATATAGAGTGAACAATCAGGTTGAAACGGCCGTTAAATACTATGAGAAAGGTTTGGAAATCGTAAAGAAGTATGAATACAAACAACAGGAAGCAGACGTATTAGTTCAATTAGGGGATGCTTATCGAGCGAATAATAAATTTCAAGCAGCAGTTGAACACTATAATAAAGCTTTGCAAATTGGAAAGAAGCATGGATATAAGCGACAGGAAAGACGGGCATTACTTGGGTTAGGGGAGGCTTTTAGAGagaacaatcagtttcaaacggTAACTGAACACTTTAAAGAAGACTTAGACGGTGCAAAATATACACAAACAGAAAAACAGGCGTCAGAAATTGCAGAGGGATCAAGAGATAGAAATGATGAAACGACGGCAGAAAATACGATGAAAGACTTGTCAAAGATTATCGGTAAGGTATAGTACCCTTGTCCGTTGCTTTCTCAACGTCTCTCGGGTTCCATTTTGTTGTGATATATTTAAATAGGTAACTTTTTGGGTGTTCTTTCTGATAAAATACTCTCACAACGCGCAGGCGTTGTTTAGATCTGGAGAATTTCCGTGATGGAAGCAAAATCTTCAGCTTTCCATCGACAGTTTAGATAAAGATATTTAAAGTGTGAcaatgaagtatttaaagttcATCAGGAACATTGCATTGCCTTTaattttttcagaaaattatAATCAATGAATTTCATAATGTGGTTGCCTTaaggtggagttacacgagcaacaaaattgctgcaacttgcaacaacatcGGATTTCAAAGCGTGTTAATTAGAAATgattacacataaattacaagtcacaaggcaacatgtgtcgacgtttctacttaacatgctttgaaatcagattttgttgcaagcatagatatcttatataaactatatagcgcatctcttttagtaaaattgaagccaagaatatcccagcggttacccccatttgaatagatggcggccatgttggagcttcccactcgctaataaacgcttaaaaaataacaataactttcatcatttaaatagtttgaaaatgtatttataataggattaacttcatgtttaagttccctgtttaagaaataggatacatacgaatcttctcatttcatgggaagatcctgagcctgcaattacggcttcaatttttgaattgcagaataattagatgcgctatctagtgtatataagatatctatggttgcaagttgcagcaattttgttgctcgtgtaactccatcTTTAGCCATAATACTGTATATCAAAAAAATAATTCTGAAAATCAAATAGAAGTCATTATGTTCATTTTTCGTCTGAGTTTTTGCCAAGTTGTGCATGGTCACGGTGATTGAACTTATTCATTGTAGAGGTGGGTCCaatattagatagcttaagatctacgacgtcgacgtcagctaggacatcagggctatgcagaggactgggactaggatgtcgtcctgatgtagtcccagtcctctgcttagccctgacgtcctagctaacgtcgacgtcgtagatcttaagctatctaatgtCCAATATGGGTAGCTGAGGTGAAACATGCTACTatgatgaataatatttaatgaagtagagacaaaggatttgtgcacgaggagatacagttcaacatcaaacaaagatTTTCTTTATAAGTACCAGTTGTATTCCGCGTAATATGGATAACTGTATTTTTAACCTTTACATGTAGATACACATAATGAAAGCAATCAAAATCTTCAAACATCTAATACGTCAGATGTTGCTCAAGTGCTGGACATTCATTGTGAGAATGTTAATAATAGTGATCACAAACACATCGAAAACGAAATTGTGAGTGACGAAACAGGAAATTCGGCCGACCAATTGTCGGTCATGGGATGTTCTCACGAAAATAAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17874	TPR_MalT	MalT-like TPR region	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan
IPR006597	Repeat	Sel1-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07126	K07126; uncharacterized protein	-	Function unknown	-	deepkoala