Genomic Location: not available for this species
NR annotation: CAB4009855.1, Cadherin EGF LAG seven-pass G-type receptor 2, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4009855.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| B4KMZ1 | Latrophilin Cirl OS=Drosophila mojavensis OX=7230 GN=Cirl PE=3 SV=1 |
| B4LNA8 | Latrophilin Cirl OS=Drosophila virilis OX=7244 GN=Cirl PE=3 SV=1 |
| B4GD14 | Latrophilin Cirl OS=Drosophila persimilis OX=7234 GN=Cirl PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003363 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16489 all species → | GAIN | GPCR-Autoproteolysis INducing (GAIN) domain | Domain | Interproscan |
| PF02793 all species → | HRM | Hormone receptor domain | Family | Interproscan |
| PF01825 all species → | GPS | GPCR proteolysis site, GPS, motif | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000203 all species → | Conserved_site | GPS motif | Interproscan |
| IPR036445 all species → | Homologous_superfamily | GPCR family 2, extracellular hormone receptor domain superfamily | Interproscan |
| IPR001879 all species → | Domain | GPCR, family 2, extracellular hormone receptor domain | Interproscan |
| IPR032471 all species → | Domain | GAIN domain, N-terminal | Interproscan |
| IPR051587 all species → | Family | Adhesion G-protein coupled receptor | Interproscan |
| IPR046338 all species → | Homologous_superfamily | GAIN domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45813 all species → | EF-HAND DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004930 all species → | Molecular Function | G protein-coupled receptor activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0007189 all species → | Biological Process | adenylate cyclase-activating G protein-coupled receptor signaling pathway | Interproscan |
CAB4009855.1.Transcript abundance of CAB4009855.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
