Genomic Location: not available for this species
NR annotation: CAB4010261.1, short-chain dehydrogenase reductase family 9C member 7-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4010261.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8K3P0 | Short-chain dehydrogenase/reductase family 9C member 7 OS=Mus musculus OX=10090 GN=Sdr9c7 PE=2 SV=1 |
| Q8HYR6 | Dehydrogenase/reductase SDR family member 9 OS=Bos taurus OX=9913 GN=DHRS9 PE=2 SV=1 |
| Q9BPW9 | Dehydrogenase/reductase SDR family member 9 OS=Homo sapiens OX=9606 GN=DHRS9 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000445 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00106 all species → | adh_short | short chain dehydrogenase | Domain | Interproscan |
| PF01648 all species → | ACPS | 4'-phosphopantetheinyl transferase superfamily | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002347 all species → | Family | Short-chain dehydrogenase/reductase SDR | Interproscan |
| IPR037143 all species → | Homologous_superfamily | 4'-phosphopantetheinyl transferase domain superfamily | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR008278 all species → | Domain | 4'-phosphopantetheinyl transferase domain | Interproscan |
| IPR020904 all species → | Conserved_site | Short-chain dehydrogenase/reductase, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43313 all species → | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
| GO:0008897 all species → | Molecular Function | holo-[acyl-carrier-protein] synthase activity | Interproscan |
| GO:0008202 all species → | Biological Process | steroid metabolic process | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0043231 all species → | Cellular Component | intracellular membrane-bounded organelle | Interproscan |
CAB4010261.1.Transcript abundance of CAB4010261.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 2.29 | 6.17 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 2.15 | 9.36 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.01 | 0.05 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.54 | 2.16 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
