Genomic Location: not available for this species
NR annotation: CAB4010593.1, brachyury isoform X3, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4010593.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q17134 | T-box transcription factor T homolog 1 OS=Branchiostoma floridae OX=7739 GN=TBXT PE=2 SV=1 |
| P79777 | T-box transcription factor T OS=Gallus gallus OX=9031 GN=TBXT PE=2 SV=1 |
| O15178 | T-box transcription factor T OS=Homo sapiens OX=9606 GN=TBXT PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004180 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00907 all species → | T-box | T-box | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036960 all species → | Homologous_superfamily | T-box superfamily | Interproscan |
| IPR046360 all species → | Domain | T-box transcription factor, DNA-binding domain | Interproscan |
| IPR008967 all species → | Homologous_superfamily | p53-like transcription factor, DNA-binding domain superfamily | Interproscan |
| IPR018186 all species → | Conserved_site | Transcription factor, T-box, conserved site | Interproscan |
| IPR002070 all species → | Family | Transcription factor, Brachyury | Interproscan |
| IPR001699 all species → | Family | T-box transcription factor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11267 all species → | T-BOX PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0045893 all species → | Biological Process | positive regulation of DNA-templated transcription | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0001707 all species → | Biological Process | mesoderm formation | Interproscan |
| GO:0001708 all species → | Biological Process | cell fate specification | Interproscan |
| GO:0003007 all species → | Biological Process | heart morphogenesis | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
CAB4010593.1.Transcript abundance of CAB4010593.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
