Genomic Location: not available for this species
NR annotation: CAB4010646.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4010646.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8WVP7 | Limb region 1 protein homolog OS=Homo sapiens OX=9606 GN=LMBR1 PE=1 SV=1 |
| Q5U4X7 | Limb region 1 protein homolog OS=Xenopus tropicalis OX=8364 GN=lmbr1 PE=2 SV=1 |
| Q9JIT0 | Limb region 1 protein OS=Mus musculus OX=10090 GN=Lmbr1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006399 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04791 all species → | LMBR1 | LMBR1-like membrane protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006876 all species → | Family | LMBR1-like membrane protein | Interproscan |
| IPR008075 all species → | Family | Lipocalin-interacting membrane receptor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12625 all species → | LIPOCALIN-1 INTERACTING MEMBRANE RECEPTOR LIMR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004888 all species → | Molecular Function | transmembrane signaling receptor activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K25215 | LMBR1L; protein LMBR1L | - | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of CAB4010646.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
