Genomic Location: not available for this species
NR annotation: CAB4010817.1, ribonuclease Z, mitochondrial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4010817.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8HY87 | Zinc phosphodiesterase ELAC protein 2 OS=Macaca fascicularis OX=9541 GN=ELAC2 PE=2 SV=1 |
| Q80Y81 | Zinc phosphodiesterase ELAC protein 2 OS=Mus musculus OX=10090 GN=Elac2 PE=1 SV=1 |
| Q8CGS5 | Zinc phosphodiesterase ELAC protein 2 OS=Rattus norvegicus OX=10116 GN=Elac2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002053 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13691 all species → | Lactamase_B_4 | tRNase Z endonuclease | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR047151 all species → | Family | Zinc phosphodiesterase ELAC protein 2-like | Interproscan |
| IPR027794 all species → | Domain | tRNase Z endonuclease | Interproscan |
| IPR036866 all species → | Homologous_superfamily | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12553 all species → | ZINC PHOSPHODIESTERASE ELAC PROTEIN 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0042781 all species → | Molecular Function | 3'-tRNA processing endoribonuclease activity | Interproscan |
| GO:0072684 all species → | Biological Process | obsolete mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | Interproscan |
| GO:0008033 all species → | Biological Process | tRNA processing | Interproscan |
CAB4010817.1.Transcript abundance of CAB4010817.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
