Genomic Location: not available for this species
NR annotation: CAB4010818.1, eukaryotic translation initiation factor 2 subunit 2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4010818.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5E9D0 | Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus OX=9913 GN=EIF2S2 PE=2 SV=1 |
| P41035 | Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus OX=9986 GN=EIF2S2 PE=1 SV=1 |
| Q99L45 | Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus OX=10090 GN=Eif2s2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007819 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01873 all species → | eIF-5_eIF-2B | Domain found in IF2B/IF5 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002735 all species → | Domain | Translation initiation factor IF2/IF5 domain | Interproscan |
| IPR045196 all species → | Family | Translation initiation factor IF2/IF5 | Interproscan |
| IPR016190 all species → | Homologous_superfamily | Translation initiation factor IF2/IF5, zinc-binding | Interproscan |
| IPR016189 all species → | Homologous_superfamily | Translation initiation factor IF2/IF5, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23001 all species → | EUKARYOTIC TRANSLATION INITIATION FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003743 all species → | Molecular Function | translation initiation factor activity | Interproscan |
| GO:0006413 all species → | Biological Process | translational initiation | Interproscan |
| GO:0001731 all species → | Biological Process | formation of translation preinitiation complex | Interproscan |
| GO:0001732 all species → | Biological Process | formation of cytoplasmic translation initiation complex | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0005850 all species → | Cellular Component | eukaryotic translation initiation factor 2 complex | Interproscan |
| GO:0031369 all species → | Molecular Function | translation initiation factor binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03238 | EIF2S2; translation initiation factor 2 subunit 2 | - | Translation factors | ko03012 | deepkoala |
Transcript abundance of CAB4010818.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 175.03 | 343.77 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 121.57 | 260.12 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 103.72 | 218.08 | |
| apical branchlet · Control at T0 | 4 | 4 | 118.82 | 245.12 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
