Gene detail

Detailed information of CAB4010829.1 in Paramuricea clavata

Genomic Location: pcla8_s007096:20153...24045
NR annotation: CAB4010829.1, heterogeneous nuclear ribonucleo A0-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-PACLA_8A004088

attagcatatttcccacaaaattgacagaatttgtcccatttatttttataataagccaatattgcctgACTGTGAAGCAAATATTgtccgactggctttgtttgcccaacaaactggagGGGTGGCCACCCCCcacccggtacgcccatggtgtTTACATGGTAAAATACTGATAATTGCCTAGATCTCCCCTCTTTCTGCTTGGACTGCCCGGTTGTGTAACGTTAATTAATAGTCACCCAGGAGAACTacttcattaaattcccagatAGCCCAGATCTTGCTGATGCCTAGAAACCCATCTTGCCAGGtaattccatataaacagaccccAAAAAGGGGAGACATAATTACGATTTATTCTTTCCACTAGTATTAGCTATGGGTATTTGTAATAATTAGACACAGGTCACACAGCTGTTATGTTGAAAAAGTACAATTTTGTTGTGCATAGTTGCACGAAGTTGGGGAGTTGGTATACTTATACAGACACCGGCATATTATCCATGCAGTTGGTGGTACACTGGtgcatatatgtatatttaggCTATAGAGCCCATTTACTGTGGACATATTAACTATGCTTTGATGCTGACCACTACATGCTGTACAGCAAAACCTTGACAACAGTTCACATAACATTAAAACTCTGTAAACAATGGTAGCAGTAGCTGGGGGACAAATGAATAATAACactatgatgttgacattgaaaTTGTTGATTAGCTATTGCAAGATTCTCTAAGCACTCCGATATCGAGCAACCATGACCGACCATAGGCATGGGTCCCTACAGAGTGCAGGAGGAATCCTGAGTGCCCTGAAAAAAAACGTGTTACTTTATTCTGCAAGAACTGAACCCCTATTTCtctatatttttcatttcatcttggtaaacaatacaacaataCAACATCAAGTTCCAATCCTTTTTGTTAGTGGATGTACCCCTCCTGATTTTCTAATGCATTAGCAAACCAATCAAATTCATTTGTAAAGCAAATTAACCAATAGGAACGCAGAATACCGTCTCCAAGACACTGAGCTGTACGGGGTTCGATCATGCCAGCGTGAAAATAGGTTGCATGTTTCATTGGATTTTTTTCGCTTTTGGTTCTAGTATAAAGGTGAAATAATCCTATTCAAGGTCAGTTTTCGTTAATCGAGTTCACTAAGAATATCTTTTAATAGTTCAACTAATTTTATTGCTTTCTTTGTCGCGATATATAAATAAGGTGCTATATGGTTTCTGAGACTGGTTGTTCGAAAGCCAATAGCTTATAAACCTttggttaacctaaaattcaaagcaaacttctgTAAAACTTCCTATAATTTTGAGAAATATTGTCTGAGTCAGTGGGTGTTTTCTTTtctgacgttttgaaataaacagacatcagatgtgcagaaatacataaactaaaacagaaGATTAAATTTGAACACATACTGCAAATCCAGGTTTGACTAATCTTGTGTGTTTGTTTGCTTTGCATAGATGGGTGAAAAGCTGGAAGATAGAGAACTAAACGCCCTTTGTAAGTTGTTTATTGGTGGGCTACCTCGTGTTATTACAGACGAAGACCTTGAAATTTACTTCTTAAAATTTACCCCGGATGAGTCGCTGAACGACTGCATTGTTATTAAAAACAAGGAGGACAAACAGTCTCGAGGATTTGGTTTTGTTACTTACAACCGACTTGCCGATGCCGACAACTGCTTAGCAAGTGGACCACATAATATTGGTGGTAAGGATGTCGAAGTGAAGCATGCTATACCAAGGGATGAAAAACTGCCTGCAAATCATATTCGTACCAACAAGATTTTTGTAGGTGGGCTTACTAAGGAAACTACTGAAGAAGATATTAGTGAAGCTGTACAGAACCATGTGCTTGCGTGTGGCAAGAGCCTTAATGCCGAAGTTACAAAGGTGGAGATTATTAAAACGAAAAAGGAAGACGGTGTTGACCCACCAGTTTCACGTGGGTTTGCCTTCCTTGACATGGCAACCAATGCAGATGCTGATAAAGTTGtgattgtaaaacattttaaaatcaacgGGAAACAAGTAGAATTAAAGAAAGCTGCGCCTAAAGGGGGAGCTGGTAGTGGAAGAGGTGGTGGACGTGGTGGTGGTGGTAGGGGTTCTGGACAGTTTGGTGGTGTCAGTGGTGGTTGGGGTGCTGGTGCCTATAATGGTGGTCTCTACAATGCAGTTGGGTTTGGTTTTAGTGGTGGATATGGCTATGGTGATGGTGCTGGTTATGGTGGATACAGAGGTGGTTACAGTGGTGGCTATGGAGATAGTAGTGGTATGTTTGGTCAATATTCCCAGCAGTCTTCTGGATTTGGACCATCTCATGGTGGACGAACTCGAGGACGTGGACGTGGCAATGCACCATACTGAAACATGTTTTATGTAAGTATTTAGACCTTCATCTTTAGAGTTACCGGGAAGAAAGGATTGGGAAGCATGTGTGAGTAAATGCATGATTATTGACATACAAAGGCTAAAACATAGGTAGACTGTTTTTTAGCAAAAGTTCTTTTCTGATAAAAGTTCTTTCCTTTGGGATTGTCAACAAATAGATCTTATGTACGTGAAGACAGATTTGTTCTGCAATTGTTTTGACCCTGTCCCCTATCACACTTTTTAAATCCGAAttattaaaggggaagtcaagtccgttctgcgcatcggttctgcgcataacaatagagggccctctgaggtaaacattgcccaaattttgaatgtttcgaatttttctgaacacaaactctacttcatattcatgtagaagcataacgaaccaaaatggtgttagatattcagacagtacatcatattttaaaaaatacagcagttcaaaatgtaaacaaaccgtttgtttacattacggacttgacttcccctttaactcgttgagccgcaatgcgccctactttttttttacttgtccaacaccagacgattttactcgttaattaatggggaagctctgcagcttaatgggttaacaaaaaaatctgacaatgtctctagttaacctaTTGAGCcgcagtttatttatttttacttgTCCAACGTGacacaattttactcgtcaatggggaagctctgcagcttaatgggttaaataattGTGGATTCTGAGCCAACACCCCATCCCACCCCACCTGTGTGAACAAAGATAAAATGTATTTGTCAACAGTCCCACACCATTCATTGTTGTGAACTTTATACACAATTCCTCCTAACTGTTGCATACCATTTTGCTTCTCCAGTAACATTCTTGCTTTTTGGTAGAGTCTGCATTATATTTCTGTTTCATTGCTTTAGGTTACGTTATCTTCTTGAGATGTTGGTTAAGGTTGCAGTGATTGGTTAAGCGTTTACAGTAGTCTCAAGACAATTGTATCTACAGTACCATTAGCTTAAAGACTGAATAATTAAAAGTTGAAGCAAACACAAGATTTAGCCGTTTGATGCAGAACTAGAACTGTCTgaaggccattttccattgcagttgCTCTGCCCGTGCGGGTGGAGCGAAATTACTCGACTTTCTCTGTAGTTGCCTAAcctgtgcattttttgtccgcctgaatgctcgcggacacgccatgaaagtagaactacattcaactttcttggcgtGCCCGGGCGACTGATTTTTCACATGATTAAAATTGGTCGCTCCGCatggcaaagcgactgcaatggaaaatggccttaagATGAAGGATTTCATAACAAGGATGAACATAGCCATTTCATTGTAGTTGTTAAACTTGTATACCTTTCATTTTAAGATAATTTTACCTATCTTGTTAAAGCTATTACCattaaattttgattaataaAGCCCAATATTTTTAACCTAAG

Protein

Uniprot

Uniprot term	Description
O43347	RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1
Q61474	RNA-binding protein Musashi homolog 1 OS=Mus musculus OX=10090 GN=Msi1 PE=1 SV=1
Q8K3P4	RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus OX=10116 GN=Msi1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12741	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3	-	Spliceosome	ko03041	deepkoala