Genomic Location: not available for this species
NR annotation: CAB4011207.1, Endothelial differentiation-related factor 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4011207.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5ZMC0 | Endothelial differentiation-related factor 1 homolog OS=Gallus gallus OX=9031 GN=EDF1 PE=2 SV=1 |
| Q9JMG1 | Endothelial differentiation-related factor 1 OS=Mus musculus OX=10090 GN=Edf1 PE=1 SV=1 |
| P69736 | Endothelial differentiation-related factor 1 OS=Rattus norvegicus OX=10116 GN=Edf1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008061 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01381 all species → | HTH_3 | Helix-turn-helix | Domain | Interproscan |
| PF08523 all species → | MBF1 | Multiprotein bridging factor 1 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR010982 all species → | Homologous_superfamily | Lambda repressor-like, DNA-binding domain superfamily | Interproscan |
| IPR001387 all species → | Domain | Cro/C1-type helix-turn-helix domain | Interproscan |
| IPR013729 all species → | Domain | Multiprotein bridging factor 1, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10245 all species → | ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03627 | MBF1; putative transcription factor | - | Transcription | - | deepkoala |
Transcript abundance of CAB4011207.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 96.47 | 155.36 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 87.33 | 240.12 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 51.60 | 104.24 | |
| apical branchlet · Control at T0 | 4 | 3 | 71.70 | 165.67 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
