Gene detail

Detailed information of CAB4011269.1 in Paramuricea clavata

Genomic Location: pcla8_s007284:9566...12928
NR annotation: CAB4011269.1, CREB binding [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A020143

GTTTGCTATAAGGAATCGTGAAATATTGTCCAAGTACTACCACTGGTATTCGGTTATTATCCGGATCCGGTTACCATAGATTACTATATATGCTGGAATTATCCGGTGTTCGCGAAAGAGTGTTCGGCACATCCCTAATGCAATCTATGTAACAACACCTATTTTACACTAACGCGGTTCATATTTTACTTGTTTAGGTGTTTCGTCGGATCTCACAGGAACAATTAAAGGAGTCTTCCAGGAGAAAAGAGGTCATTAATGAATGTCTGACCATACTAACGCATTCAAGAAAGTGCAAAAACGACGAGTGCACGTCGCAGAGATGTATTTCAATGAAGAACGTCTGGAAGCACTTCGGTGCATGTCCTGAAAACAAGAAGTCGAGTCCAAAATGTCCTATTTGCAACAGTGTCATATCTTTATTACATTACCATGCAAAAGATTGTCAAAATGACTCGTGCACAATGCCACGATGTCGAGAACTTAAGGACGGATTTTTGGCAAAGTGGCAGAAAACGCAGCAGACTTTCCTCGGTAATCTGGTCAAGTTCAGGTTATCAACTGTACCCACAGTTATAAAACGACAATCCAAAAAAGTTAATACCAAGTCCTCAGTGCAGACTAACGAAAATAATTTAGTAAGTAAACCAGTGACTAAGGATTTAGTTACTATCGAAAATTAATGGATCtgtgattattgaaaataatttacagATTGCATaggaattgaaaaaaaaatcataggACCATAAAGTTataattgtgtatatatatatacatatatgaagAAGTAtagaatataatattaaaatgttattttataatttataatttatgttGAGTGTCTAAAGGCCCATACATTTTTTACACGATACCATGCACTAGTCGTATATGATTGTCATTCTGGCGTATGACAGAGACTACTAACGCCACTATTCCTCTTCATCAttttatggcgaaatttgaaatgtggcATCTTTTCGCAGGAAATCTACATGTcaccgtttttgacgtctttcagtttatttaaaaaacagATAAAGTATCTGTGATAGCGTGGCACACTCTAAATTGCAATACCAAAATGGTGTAATCATTGCAGCTCTGTAGATATTGATTTAGTGTAAAAAACACCGATGTCACTTATTGGGTGTAAATATCACAACTGATCAGTGTATATTTGGTATTTCCCTAACACAAAATATGGTGTTAACTTTTACAATAAATCATTGTCTACCGAGCTGCAATGATTACATCATTTTGGTTTTGTAGCAACACTCAGAAATTTAGGAAACTTTTACTAAAAATCAGGACAATTGTTGTCATCTGTGGCAAAACTGTGGAGTTGATGATTGTTCTTTCAAATATTCTTGACTATACGTATTTGCAAGTAAAACAAACTTTCAGATCACAAGAGAATACGTAGTCAAGAATATTTGAAAGAACAATCATCAACTCCACTGTTTTGCCACTGAAGACAACAAATTCTCATATCTAAGTAGATATGAAAATATATCTACTTTGACGAGTGTGATAAATACTGAATTATGTAAGATTTCAGACAGTCTAATAAGCTCTCTTTGAGTATAAATAAATCAAATTACATAATATTTAAACCCAGGCAAAAAAGGCAAGTGTATAACCTGGCACTTGCGATTAGCAATAAcataaggcccggtttagacggcgaacttctcatgcgccgaatctaatgcaagaattaagtgcgacgctggagcggcgtctaaatcaattaagttcgacaggttttgattaagttcgacatgactcgaagatgcgacaagacaagtcgtatatgcgacacaggttcgacattgatttagacgccgtgcttttcatgcaccgaacctaatgcataattattttttaacatcataatatgattatcatatatttgcattgtaaatatgtccaatatagtgtcctcgcaatttggtacggtacaattaagttcgacgtctaaatcagcttccgatattttgccgtatctacgacaattagattcggcgcatgaaaagtttgccgtctaaaccgggcctaactGACAGGATTAAAAAAGTCTGTTTTTCTTAGTGTAATTTTGGACGAGAATTTAACATGGAAAGCACATATATCTTATTACgaaactggtttttcgtatctctgaggatggttctgaaatataTCTTATATTGCacgtaaaatttcaaaatcaattgGAATTATCTATATAGGTCAAGCTTTTTTATTCAAATCAGCCTTGCGGATTTTATATTTTGCCACAGTATATCCGTATCTTCAATATTGTGTTACGATTTGGGATTCCACATATTCAAGTAATCTTAATCGTATTGTATACTGTTGCAAAAACGTGCAGTACGAATTGTCGACAACAAACAAtatttcggtcacaaaataCTGAAATTCGAGgatatttatttaattcaatTGAGTAAATTTATGTATCTATATCAACAAAAATTACTTCCTGATTGTTTTGAAGGTCTATTTTCATTACGTTATAGTCAGATTCATTATTATAATACACGAAATGCCAAAACTTTTTATGCCCTCCAATGTAGGACAAATATTCGTCAGTTTTCGGTCAATTATCAGGGTCCTAAATTCTTTAATACATTGAATCCCGATATACGTAAATCttcatctgtatttaaatttcagtatatgttaaaaatattgtttcttTTTTCTCACTACATATAATctcaataatttatttatttcaaacgTGACGCTTTTTTTTGTAacatttgtatttaatataatataaaacatgaGGTAGCCCAAATTCCTATACAAAGCCTCTTGGTTTCTATTCGAGCTTCCTCGCCactttttgttcaaaattattgtTTCTTCTATCAACTTATATATCTTTCTAataacattttattattatacatttactTATTTATTAACTATTACTTATTTGTATTGTGGTAAACCAAATCAATAAATCATTCATTCGTATCAAAATTAATGTAATATGTCTTGGAAGGAACACGAAATTAATTTTTTgctgaaatgttgtaaagtaaCTCATACATTACCAATTCTGGATTGAGTTGCCTTGGTTTACCCTGAATTGCCAAGGATCACGAATTCTCAACTCAAAAATTTCAACCCAACCGAGTCGTCAGCAAATGTCCTTTTCCTCTCTCATTGAGGACGAACACCAGCTCTTAACCGTTTAAAAAAGAACAAGAGATCGAGAGGTGGCAGCACTGATCTCTTACGCCACTTCCGAAGAAGAAAGATGAAGATGGAGAGACTACAAGAAGTAAGCCCACTGGAAGAGATCATATTATTTGTAGGGATGTAAAGTAGGGATGTTAAAAAGAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001902 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02135 all species →	zf-TAZ	TAZ zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035898 all species →	Homologous_superfamily	TAZ domain superfamily	Interproscan
IPR013178 all species →	Family	Histone acetyltransferase Rtt109/CBP	Interproscan
IPR000197 all species →	Domain	Zinc finger, TAZ-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13808 all species →	CBP/P300-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4011269.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4011269.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

17TPM > 0

4Conditions

42.5Max TPM

10.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	10.38	28.80
apical branchlet · Temperature treatment at T0	6	6	15.62	42.50
apical branchlet · Temperature treatment at T25	5	3	7.50	30.01
apical branchlet · Control at T0	4	3	5.32	10.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	28.80
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	11.06
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	9.55
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	7.07
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	5.83
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	42.50
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	19.42
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	10.44
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	9.77
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	7.81
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	3.81
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	30.01
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	5.00
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	2.50
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	10.71
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	7.40
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	3.18
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.