Genomic Location: not available for this species
NR annotation: CAB4011808.1, cytoplasmic polyadenylation element-binding 2-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4011808.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7SXN4 | Cytoplasmic polyadenylation element-binding protein 4 OS=Danio rerio OX=7955 GN=cpeb4 PE=2 SV=1 |
| Q812E0 | Cytoplasmic polyadenylation element-binding protein 2 OS=Mus musculus OX=10090 GN=Cpeb2 PE=1 SV=1 |
| Q7Z5Q1 | Cytoplasmic polyadenylation element-binding protein 2 OS=Homo sapiens OX=9606 GN=CPEB2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001456 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16366 all species → | CEBP_ZZ | Cytoplasmic polyadenylation element-binding protein ZZ domain | Domain | Interproscan |
| PF16367 all species → | RRM_7 | RNA recognition motif | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR038446 all species → | Homologous_superfamily | CEBP, ZZ domain superfamily | Interproscan |
| IPR034819 all species → | Family | Cytoplasmic polyadenylation element-binding protein | Interproscan |
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| IPR032296 all species → | Domain | Cytoplasmic polyadenylation element-binding protein, ZZ domain | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12566 all species → | CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003730 all species → | Molecular Function | mRNA 3'-UTR binding | Interproscan |
| GO:0006417 all species → | Biological Process | regulation of translation | Interproscan |
| GO:0045182 all species → | Molecular Function | translation regulator activity | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02602 | CPEB, ORB; cytoplasmic polyadenylation element-binding protein | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of CAB4011808.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 4.47 | 16.60 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 3.22 | 6.92 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.48 | 2.38 | |
| apical branchlet · Control at T0 | 4 | 1 | 2.14 | 8.55 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
