Genomic Location: not available for this species
NR annotation: CAB4011879.1, prostaglandin G H synthase 2-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4011879.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O19183 | Prostaglandin G/H synthase 2 OS=Equus caballus OX=9796 GN=PTGS2 PE=2 SV=1 |
| P70682 | Prostaglandin G/H synthase 2 OS=Cavia porcellus OX=10141 GN=PTGS2 PE=2 SV=1 |
| P35355 | Prostaglandin G/H synthase 2 OS=Rattus norvegicus OX=10116 GN=Ptgs2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0022376 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03098 all species → | An_peroxidase | Animal haem peroxidase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019791 all species → | Family | Haem peroxidase, animal-type | Interproscan |
| IPR010255 all species → | Homologous_superfamily | Haem peroxidase superfamily | Interproscan |
| IPR037120 all species → | Homologous_superfamily | Haem peroxidase domain superfamily, animal type | Interproscan |
| IPR050783 all species → | Family | Oxylipin biosynthesis and metabolism | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11903 all species → | PROSTAGLANDIN G/H SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004601 all species → | Molecular Function | peroxidase activity | Interproscan |
| GO:0006979 all species → | Biological Process | response to oxidative stress | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| GO:0004666 all species → | Molecular Function | prostaglandin-endoperoxide synthase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016702 all species → | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Interproscan |
| GO:0019371 all species → | Biological Process | cyclooxygenase pathway | Interproscan |
| GO:0043005 all species → | Cellular Component | neuron projection | Interproscan |
CAB4011879.1.Transcript abundance of CAB4011879.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
