Genomic Location: not available for this species
NR annotation: CAB4011941.1, collagen type IV alpha-3-binding -like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4011941.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6P3Q6 | Ceramide transfer protein OS=Xenopus tropicalis OX=8364 GN=cert1 PE=2 SV=1 |
| Q6VVX2 | Ceramide transfer protein OS=Cricetulus griseus OX=10029 GN=CERT1 PE=1 SV=1 |
| Q6NRZ4 | Ceramide transfer protein OS=Xenopus laevis OX=8355 GN=cert1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007027 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01852 all species → | START | START domain | Domain | Interproscan |
| PF00169 all species → | PH | PH domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023393 all species → | Homologous_superfamily | START-like domain superfamily | Interproscan |
| IPR002913 all species → | Domain | START domain | Interproscan |
| IPR051213 all species → | Family | START domain-containing lipid transfer | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR001849 all species → | Domain | Pleckstrin homology domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19308 all species → | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008289 all species → | Molecular Function | lipid binding | Interproscan |
| GO:0035621 all species → | Biological Process | ER to Golgi ceramide transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08283 | COL4A3BP; collagen type IV alpha-3-binding protein | - | Domain-containing proteins not elsewhere classified | ko04990 | deepkoala |
Transcript abundance of CAB4011941.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
