Gene detail

Detailed information of CAB4012340.1 in Paramuricea clavata

Genomic Location: pcla8_s007679:16931...19016
NR annotation: CAB4012340.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A018943-2

ATATAAACGAATACTACATTTTTGCTTATTGCCGGTAAGTCCTTTATATTCTGTTTTAATAGGAAAACTTACTAGTAAAAGTGATTTTCTGTTGTTTGGTTGTGTTCGCTCACTCAGTGTGTCGATGAATGGCCCAATTTATATGTTCGCATTTTGCTCGACAAATCGtcgtattttttacatttttcaacAAGGTCTATGAAGAGGCCTCctataaataaaatatgaaagaaTCTTCTTTGTTGActctttttttaattaaacattgatTCATTAAACCGACTGTTCAAAAGTTTATATAGGCTATAGCTACAGTTACGTAAACATGATGTGACGTGTATGTATATGTTTCAAAATGCGTATTATTAAATTGTAACTTTGTGCGAATTTAGAATACGATGAAAATATTCTCGATATTCGACACActaattttatagaatttttttgtgtttATGAAACGTTTATGAaacaatataaattaataacGTTAGTTAGACTTTCAAACTACGAAGGACTTTTCCAGTCTCGTCCGATCCCCATTTaccaaattaatttaaaaaaaaaagaagaaaaaaagcTCGCTTCATTGATATCTCTTCAACAAATCAAAGGGAATATAATAGACATTTCCCCTtgtgagtgaaattttgatctcaacaagtctagacaaaaatttccccacagattgaaagagcatcacaaaattagtaatattccgaagtttcgttgcgaaatgttgtaaaatgcggataatatagccttgcgaagtttgccgtttttcagtcattttgcattacaaacgggaaattgatacagTAATCAGCAGATatgatgatcaaactgattatcaatttcccatttgtaatacaaaatgactgaaaaacggtaaacttcgcaaggctatattatccgcattttacaacatttcgcaacgaaacttcggaatattactaattttgtgatgctctttcaagctgtgatgaaatttttgtccagacttgtctagatcaaaatttcactcaaaagggtaAAGGTCTATTGGTTATagaaacatgtcaatcaaagcATAATGCACTCAGTTATTAAATTTCATACTTATAAAACCACAACTCCATCACCCTACTTATTTTTATCTGTGCCTATATAAATTAgtgaatttattttcaatattttcagcTCAAGTATGGCAGCCTTAAAAGTTGCAAGcaacttttcaaaaatatcaaTGGCACCTTGGTACAAGACTGTAATGATGTGTCGACCAAAGTTTTTTGACGTCCGACATCGTTTTCTTAACGCTCACATGGATATGAGGATTGCAGTAAAAAAGAATCTTGCTTTAACACAATGGGAAAATGCATATAAAACCTTGCTTGCAAATAATATCAAAGTTGACCTTTTGGAACCTCACCCTGATCTTCCTGATATGGTTTTCACTGCAAACGCAGGGATCGTTCACGGTAACAAAGCAGTGGTTTCCAGTTTTGGAGCAGTGCCCCGTCAACCGGAAACACATTACCATATTCCGTTTTTCAAAGAGCGAGGCTTCGAGGTTATAAACCCAATTGATGACGGAGTCGAGATAGAAGGCTGTGGTGATTTTATGCCCACGCACAACGGGGAGAACTTTTTCGTGGCCTATGGATTCCGTAGCTCATTTAAAGCCTATGCCTACCTGAAGGATGTTCTGTCACTACCAAAAGATcggcttcatcacatgaaattaaTGGATCCATATTTCTACCATATTGACACAGCACTGATGAGTCTAACCCATGGACACCTGATGTACTACCCTGGTGCATTTGACAAAGAATCTGAGGAAAAAATCCTGGATGTTGGAGGAGATAAGACTATTGCAATCGGGAAAGAAGATGCAATGGATTTTGCATgcaattctgtaaattttgagGAAAGTGGAGAACATATTATTGTTGGAAACAAGTTCAGTGACATACTTAAAGACAAATTGACCAACTTTGGGTACAAGGTGATTGAGACACCATACCAACAGTTCCTATTGGCTGGAGGAAGCATTCGATGTTCTGTACTGGATATTGGAAAATCTGATGAAATGGCTAGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8YMD9	Bifunctional arginine dihydrolase/ornithine cyclodeaminase AgrE OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=agrE PE=1 SV=1
P74535	Bifunctional arginine dihydrolase/ornithine cyclodeaminase ArgZ OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=argZ PE=1 SV=1
P71889	N(G),N(G)-dimethylarginine dimethylaminohydrolase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv2323c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0015454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19420 all species →	DDAH_eukar	N,N dimethylarginine dimethylhydrolase, eukaryotic	Family	Interproscan

InterPro

No InterPro signature was detected for CAB4012340.1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR47271 all species →	ARGININE DEIMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016990 all species →	Molecular Function	arginine deiminase activity	Interproscan
GO:0019546 all species →	Biological Process	arginine deiminase pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4012340.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4012340.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

13TPM > 0

4Conditions

3.7Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	0.50	1.12
apical branchlet · Temperature treatment at T0	6	5	0.80	2.05
apical branchlet · Temperature treatment at T25	5	3	0.91	3.65
apical branchlet · Control at T0	4	1	0.09	0.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.12
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.03
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.66
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.20
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.05
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.56
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.67
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.47
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.04
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	3.65
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.74
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.14
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.35
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.