Genomic Location: not available for this species
NR annotation: CAB4012345.1, Meiosis arrest female 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4012345.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| E1BZ85 | Meiosis regulator and mRNA stability factor 1 OS=Gallus gallus OX=9031 GN=MARF1 PE=3 SV=1 |
| Q8BJ34 | Meiosis regulator and mRNA stability factor 1 OS=Mus musculus OX=10090 GN=Marf1 PE=1 SV=3 |
| Q9Y4F3 | Meiosis regulator and mRNA stability factor 1 OS=Homo sapiens OX=9606 GN=MARF1 PE=1 SV=6 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004453 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01936 all species → | NYN | NYN domain | Domain | Interproscan |
| PF11608 all species → | MARF1_RRM1 | MARF1, RNA recognition motif 1 | Domain | Interproscan |
| PF12872 all species → | OST-HTH | OST-HTH/LOTUS domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR024768 all species → | Family | Meiosis regulator and mRNA stability factor 1 | Interproscan |
| IPR041966 all species → | Homologous_superfamily | LOTUS-like domain | Interproscan |
| IPR021139 all species → | Domain | NYN domain | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR025605 all species → | Domain | OST-HTH/LOTUS domain | Interproscan |
| IPR034189 all species → | Domain | MARF1, RNA recognition motif 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14379 all species → | LIMKAIN B LKAP | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005777 all species → | Cellular Component | peroxisome | Interproscan |
| GO:0010468 all species → | Biological Process | regulation of gene expression | Interproscan |
| GO:1905762 all species → | Molecular Function | CCR4-NOT complex binding | Interproscan |
| GO:0004540 all species → | Molecular Function | RNA nuclease activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17573 | LKAP, MARF1; meiosis arrest female protein 1 | - | Protein phosphatases and associated proteins | ko01009 | deepkoala |
Transcript abundance of CAB4012345.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
