Genomic Location: pcla8_s007782:58...2085
NR annotation: CAB4012588.1, Retrovirus-related Pol poly from transposon [Paramuricea clavata]
| CDS | |||||
| PACLA_8A058074 | |||||
| Transcript |
| rna-PACLA_8A058074 |
| Protein |
| CAB4012588.1 |
| Uniprot term | Description |
|---|---|
| P03356 | Gag-Pol polyprotein OS=AKV murine leukemia virus OX=11791 GN=pol PE=3 SV=3 |
| Q7SVK7 | Gag-pol polyprotein OS=Murine leukemia virus (strain BM5 eco) OX=31687 GN=gag-pol PE=3 SV=2 |
| P31795 | Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) OX=31689 GN=pol PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00665 | rve | Integrase core domain | Domain | Interproscan |
| PF17917 | RT_RNaseH | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052160 | Family | Gypsy Retrotransposon Integrase-like | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR001584 | Domain | Integrase, catalytic core | Interproscan |
| IPR041373 | Domain | Reverse transcriptase, RNase H-like domain | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR041588 | Domain | Integrase zinc-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47266 | ENDONUCLEASE-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K07497 | K07497; putative transposase | - | Replication and repair | - | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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