Gene detail

Detailed information of CAB4012609.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4012609.1, 26S proteasome non-ATPase regulatory subunit 1, partial [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Sequence

No sequence record for CAB4012609.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99460	26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens OX=9606 GN=PSMD1 PE=1 SV=2
Q5R5S4	26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii OX=9601 GN=PSMD1 PE=2 SV=1
Q3TXS7	26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus OX=10090 GN=Psmd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004541 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18004 all species →	RPN2_C	26S proteasome regulatory subunit RPN2 C-terminal domain	Domain	Interproscan
PF13646 all species →	HEAT_2	HEAT repeats	Repeat	Interproscan
PF01851 all species →	PC_rep	Proteasome/cyclosome repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040623 all species →	Domain	26S proteasome regulatory subunit RPN2, C-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR002015 all species →	Repeat	Proteasome/cyclosome repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10943 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008540 all species →	Cellular Component	proteasome regulatory particle, base subcomplex	Interproscan
GO:0034515 all species →	Cellular Component	proteasome storage granule	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03032	PSMD1, RPN2; 26S proteasome regulatory subunit N2	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.