Genomic Location: not available for this species
NR annotation: CAB4012610.1, 26S proteasome non-ATPase regulatory subunit 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4012610.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q99460 | 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens OX=9606 GN=PSMD1 PE=1 SV=2 |
| Q5R5S4 | 26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii OX=9601 GN=PSMD1 PE=2 SV=1 |
| Q3TXS7 | 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus OX=10090 GN=Psmd1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004541 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13646 all species → | HEAT_2 | HEAT repeats | Repeat | Interproscan |
| PF01851 all species → | PC_rep | Proteasome/cyclosome repeat | Repeat | Interproscan |
| PF18004 all species → | RPN2_C | 26S proteasome regulatory subunit RPN2 C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR002015 all species → | Repeat | Proteasome/cyclosome repeat | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR040623 all species → | Domain | 26S proteasome regulatory subunit RPN2, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10943 all species → | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0008540 all species → | Cellular Component | proteasome regulatory particle, base subcomplex | Interproscan |
| GO:0034515 all species → | Cellular Component | proteasome storage granule | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03032 | PSMD1, RPN2; 26S proteasome regulatory subunit N2 | - | Proteasome | ko03051 | deepkoala |
Transcript abundance of CAB4012610.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
