Gene detail

Detailed information of CAB4012991.1 in Paramuricea clavata

Genomic Location: pcla8_s007932:439...7635
NR annotation: CAB4012991.1, 7SK snRNA methylphosphate capping enzyme-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A064781-2

ATGGAAAAGGGACTAAAATCTCATCATCTTGGACACAAAAAGAAATTCCACAGCCCGCTTGGGGGAAAACGCCTGCACAAAGCATCGATTTTACCCAAATTTAGTGTTAATCTCAAAGAGCCAGATAAGGCAGGAGTAAAAACTAAACATGGGTCTAGGGGGTCGAAACTCAAATTCCAAATGGGCGGGGATAGTACCGACCCGTTGAATTTAAACAGCTTGATCGATAGAGACCCTGCAGAGGTAACACCACAGTGTTCACCTTTTGTTGATCGTATGAAGGAGTTGTCACCGCAAGTTCTTATTGCAAGGGACGTAACTGATCCTTTGAATCTAAAATGCCATGTGTATCAGGACTTGAAAGGGATGGTGACGCTGGCAAAAAAGAAGCGGAAACGCAAGCGAAACGACAGCGGTTGCTTCGACGACGAACaggaaaataaaaataaaaaagaaaccGATGTAAACAAAGAGGATCTAGTTTCgccgaaatttaaaaagaagaaaATGCAGAAGCATGGAAGAGATGGAAAAGAGGTTAAAATtaaagaaaagaagaaaaacaaAGTGGAAAAGGAATTGGATACCACGGATGGAactaaaattgagaaaatatcaTTAGAGGGAGAAAAAGTTTCGGAAAGTATGTATGAAAAACCAGAAACGAGTGTTAAGGATGAAAAATTAAGTTCTGAAGTCAAAGAAGAGTCTATGAATGAAAAAGCAAAAGAGACTCTTAGTTTTAATGATAAATTGCCGAAACCAAAAACTGAGccaaaaaatgctggaaaatcTGGCTCAAGCAAACAAAAACACCAAAAGACTTTCCTTTATGGTAACTATAATCGTTACTATGGTTACCGTAATCCGAAAGTTCCAGATGACCCTCGGCTCAAGTTGTTCCATCGCGAGTGGTTCCAAGATAAGACTGTGTTAGATATTGGTTGTAACATAGGTAACATTACCTTAGAACTAGCTCGGAGTTTTTCACCCAAGCATGTATTAGGTATTGACATTGATAGCTCGTTAATACGAGCTGCCAATAAGTCTCTAAGGtgcacaattcaaaagaatataAGAAAGAAGCCAACGCAGTCATCAGATTTTCCCATGTCATTTATGGTGTGTCGTGGTCCAATTGTGTCTCGGACATCTCCAACCGAAGGAAGAACAGGATTTCCTTATAATGTGCAGTTTAAAGAGGTAAGTGTGCTATGGAAATTTACCCTCTCTTTTAGATGACAGACAGCAACATAATGTTGtagtagcccccccccccccgcataACGCCTCGGCGGCACTGGTGTGATGTACCTTGAATGTGCGCAAGGAAGGAAGGGAATTTTCATGTATGTCTCATAATTTGCGGGTATATAGCCCGCATGTTTAACTACGTATAGCCAGCCTCCATGTTTAGCCAGTGATTGTCTTTATTCTTTAACTATACAGCTATACAGAGTGACTCAATAGGTTAATCTGCCCATGCATCCTGTTAAAccttaagtggcaatgtgccctgatgcCCCCACTTTATTAAGTTACTTTGTTTAATGCCAGATGAGTTTACTCCtcaggggagagtgctgccactcaatgggttaaattgcCTGGGCAATAAATGTTACTGTTGTATTAACCCAGTGAGCATCGGCACTCTCTCaacattgatgagtaaaattgactgatgttagacagagtaaaataatattattaatgtaGGGTGCAGTCATGTTTTTCTGAACCCTTAAAACAACTGGTCAACATCTGTCACTGTTGGTTTAGTAGGTGCAAAATGGGTTATCCCCGGACCCCTGtacatagtcatagtcatagaaTTCTGACATCACAAGTTATTAAGTTagtctgcccccccccccccaaaaaaaaaaattaaaaaaaaatactggATCCACCACTGGACATTTCTTAACTCGGGTCTGAATGTCAAAATGTTGCAGGCTAACTGAATTTCCCAAATTCATTGCCTAATTTTTGTTTACATCTGTTCACACTAAGCCATtaaaacttcctgacagctttttataaatttggaaatatttcttccgAAATCTTGTCTGAATTGATATGAGTTTACTTCCCTGAACgactgaagttttgaaataagcAGACGTGCAGGAATACACAAGCCAGAACAGCCGGTGAAACCGACCCCATGGTGTTAGCTACAGTAAAAATTCGCCGTTTACACAATTCGCCGTTTACACAATTcgccgttttcaaaattacgttTAGCCAGCAGCCcagcaatttcacatttttaGATAAGCCAAAAACGTAACtattaatagtatatattatataaaagatTGGGTGCCTAAAATATATATCTGTCTGTTTTTAATGCGCAAAACAATGTCACGTGACTTGCActtcaaaagtttcaatttaGCTCAGCTGGCGCTAGGCCACGAGATCCTGACTAAGAAACATGATATTCCTTAACTCCGGGCTGAATGTCGCAGGATAACTCCGTTCTAGCCTGCGGGCAGCCCCACTGCCCCATACCACATACCTTCCCTCGTTTACGTGGTATGGGGCTGCCCGCAGGCTACTCATCTTCTGGATTActtgtatttttgtattcaagCCAAAACATGCATTAGTCATTACGGTATACTAATCTTTTAAAAACACTTATCTTTCTTTTAAAAAAACTGAGATTCCCTTATATAGTACTTGCAATAGTGAATTCATACATAACTTCCAAACTACTTTACTCCCAAACTACGATTGTTTTACAGTCTGTTGGCTTGGCCGTGAAAGCGATATAAATAACGTGGTTTGAACAACTACAGCGTACTAAAATGCTTAAGAAAATGCAAATTATTGTCACCTTTGGCTTTGTCTTATAAGATTAAGGGTATTGTTAACGAGcacgttgccgttgtatttgccaaactctctatcACAGTTTCGATACGGATTCGCAAAACGAGCTCAAATagtgaaaaaaattgaaaaataataaaaagataatAAAAAATGCTAAAGTGGAGCAAGATAAAGACGGTGCCCCTGTTGACAGGAAGCCGCCAAGGCCGGATTAACCATATCACAAATGGCAGAAGCGGCATATGAAACTGCTTGAATCTGAGACGTTGGAAAATTTCACCGGCAAAATCAAAAAATTTTATAGGCAAACTATAAAATATGTACTTGTTTTAAAATCTAAGACTAAGTATTGCAATGTATTATATAATGCAATATGTAGCTGTCAGCCTGTCATACGATATTATTGCTCATACCCATTGTGTCACTGAAGATACAAGTGTCGGGAGTCAGTTGACGAaggcgagggtaaaaagtcgaagGTAATATAAattgtcgagggtcgaaaaatcacaagaaaaaAGGTGCTATATTAAGGTCAGGTAACCGCTTCGGATAAAGAAATAGCGAAAATTACGTAATCTTCTTGGAATTTTGTTATATGAGTACTTTTATACCAACAAATGAAACGTAGCCTATATGCTTTTCacgtagcctcctccgcaggcaactgtgtagttctgcaacgttatattaactataaaagatttatcaggaacgtagaaaatacaaggaaatagTTCTGAAATCGATATGATATTAATAAACAAGAAGCGTAAATTAAAAAGGCCTGGAGCGGAAAATTAGGATGGCTTGTGGGTAATGTAGGAAGTAAtcgcctcccccccccaccccccccttTCCCGCCTCCCTATTTTTCCGCTCCACGCCATTTTATCTGATTAATATAtcatcatttatagaccctccgctcagGGGATTcagcgaaatattacccgaagtgatgatatttcccggggggggggctttgccacgagggaaatatcatcaccgaaaattaaaagcctccaagttgagtattaaaaacttgacacataccttcgtgaatacgatgttttattttcggattaacgcaagtatcgtcgcttttctttcgaatcacatatcgtttggaatattaatgacaacatttttcaaaatttgcttcaaaattttgaaaaagccccaggcTTTAcgtttaaagtggaagtcaagtccgtaatgtaaacaaacggtttgtttacattttgaactgctgtattttttaaaatatgatgtactgtctgaatatataaccccattttggttcgctatgcttttaaatgaatatgaaatagagtttatgttcagaaaaattcgaaatttgggcaatgttcacatatTTAGTCATTTAGAGGGTcgtcacattgttatgagcagaaccgatgcgcagaacggacttgacttccactttaaattttgattattcatcactcatcaatactatttatattttgtcggccatgttgttgtcatgcgtgttgtctcgcgtggtctacgcgaataatgttccaccccatgttccccggggaacgcAGGCTCCCTAATTGATGGCGGAACGCAGGCTccctaattgatgacgtaaggcgtgatatcgcgattaatttcatgttCACGTGGtacaaactaagcttcctgattggacaatttgaatttgaggtataatatcaTATCTTATCATGTCGTATTTCAGAActatttccttgtattttctaCGTTCCTGATAAATCTTTTATAGTTAATAACGTTGCAGAACTAcacagttgcctgcggaggaggctacttTTCACgcacatacaaaaaaatattaattttagttCAAATTATTGATGTTTATTTCTTCTTTCTTTTTTAAATACACAGCCGGCAACTTTTCAACACATGGAATACAAAAGGATATTTTTGAATCTTCCGAATTCAGTGTTTAAAATGccgttggggaggggggggggggcggggtcAAGGGGCTACGCGCTCATAATATATAGTAGGGAGTTGTAAGACGGtgacgtcaggacgacggctaaacaaactgtttgaaataaatgattgtatggaaatcttgtcttgtattttctttcgtatgaatttaaaatagtttcgaaagcgtaaaacagagctttaaccttCAGAGCAGTTTTGATTAACGCCGCTAGAAAAACTACCAGTCACGGCGTGAAATGCTAGCGTACTACACAGaacgtgaaaatatgcattttgccgttgtcaacagagcttggacgacgtctaaaacccCTACTAAACATttaattattcatattttttttgtgataggatcatagatatcttaccggtatataaactagataacgcatctcttttagtaaaattgaagccaagaatattccagcggttacccccatttgaatagatggcggccatgttgaagtttcccactcgctaataaacgcttaaaaaacaacagtaactttcatcatttgaatagtttgaaaatgtatttggaataggtttaatttaatgtttaagttccctgtttaagaaatagaaaacatacgagtcttctcatttcatgggaatatcctgagtctgcaatcacgacttcaatttttgaattgcagaataattagatgcactatgtAGTGTaaataagatatctatggataagattaatatcattctattgatagccgtcgtcctgacgtcgccGTCTTACATTCGTAAACTCCCTAGTTTACACGATTCACGATGCGGCGAGAGAAGACGCGTTAGAAATTCTTGGTAACTACCGCGGCCCAAGCCTCGTCGTCTTACTTTGGTCGGAAAATTCTAGGTTTTTCAAAatctttgtaatttttgtttaaacACCACTGAAAATGTAATCAAAGGTAGCTACTTCATAAAATAAAGTAACAAGTTAAGAACTTAAATTCACGTTTTCAATGCAAAAATATTCGATGCTCAGGttagatagatagaaactttatttatacacgctgaccccgtcaaccgaggctggtttccacggggggcatgtgcaaaaatagaaaaatgctacatggagatattaaaagagttaagtttaaaaatgtagaatcttaaattatttacatgacAAGAAGGTTGTTAGAATATTTACAGTTACATCAATTTACTTATTACtttatgtcaattttgtgagcagcgattttatttcgaaaggaagaaagaaTTTTGCATTCCCTAATTTcctttggaatagaattccaaaggtgtgctccttcatacatgaaactatttttcatattgttaGTACGCGGTTTTGGTAAACTAAGACCACTTGAAATGTCCCGAaggttgtagtttgttttctcacATTGGTATGAAAAAAGATTGGTGAGTGATTTAAAGGACCCATTCTATTTAATACTTTGTACATCATTTTTGCCTTGGCTTTCTTCCTTTCTGACTTGAAATTCGCAGCGTAATGATCACAAcgtgaaattgacaaaattccTTCGTAGAATGGTCGACTACGCGTtggaataggcaattccagcttttagtttatgcctgcaggggatgatgggaagtaaggtatcatagtgcTATAATAAATTGCTTCAataaaaacaaccgaaatatttcaatatttacaagtataagctatcactccgtgataccttacttcccatcgtcccctgcacgcataaactaaaagctggaattgcctattcaaCACAAGACGCGTTGGCCGCGCTAGTTACCCGGCCTTCCGAACGCGTCATCTTTAGCCGCGTCGTGAATCGTAAATCTCTGATATGCCACGGGCTCCGCGAAACGTTAATCCGGCCCGGCCGCCAAGCGCTCAGTTTTcatctcgctccgtttagaaactgTGAGGGGCAAAAGTGATgctttcaaacaatttcgctctGTATTGTGGCTTTTCCGCGTCGTTTTCAAACCACTCCGGCGAAGTGTGAACGTATATATGTAGTCTTAGAATGAGCCAATGGAACCAAATATGAACAATTTGTAGTAATCATTATTTAAACCATAATATGCCCACAATGTCAATTTGTAAAATActtgttattaaaattattttgctaATTTATATTTGTTCAGGAAAATTTTGTCCTTCAAAATGACAAAGCATTGGCTAAACAGAAGCCAACCTATGATGTGATACTTTGTCTAAGTCTCACAAAATGGATCCACCTGAACTGGGGTGATGAGGGACTTAAGAGGACATTTCAAAGAATGTTCTTGATGTTGAAACCAGGTGGACGACTGTTGCTGGAGGCTCAACCTTTTAACTCTTATTCAAGGAGAAAGAATCTCAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3KQ55	7SK snRNA methylphosphate capping enzyme OS=Danio rerio OX=7955 GN=mepce PE=3 SV=2
Q7L2J0	7SK snRNA methylphosphate capping enzyme OS=Homo sapiens OX=9606 GN=MEPCE PE=1 SV=1
Q9U2R0	Probable RNA methyltransferase Y17G7B.18 OS=Caenorhabditis elegans OX=6239 GN=Y17G7B.18 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006613 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13649 all species →	Methyltransf_25	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR041698 all species →	Domain	Methyltransferase domain 25	Interproscan
IPR024160 all species →	Domain	Bin3-type S-adenosyl-L-methionine binding domain	Interproscan
IPR039772 all species →	Family	RNA methyltransferase Bin3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12315 all species →	BICOID-INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0017069 all species →	Molecular Function	snRNA binding	Interproscan
GO:0040031 all species →	Biological Process	snRNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15190	MEPCE, BCDIN3; 7SK snRNA methylphosphate capping enzyme	EC:2.1.1.-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4012991.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

18TPM > 0

4Conditions

14.4Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	3.90	6.68
apical branchlet · Temperature treatment at T0	6	6	5.79	14.43
apical branchlet · Temperature treatment at T25	5	4	2.38	5.74
apical branchlet · Control at T0	4	3	4.07	14.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	6.68
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	6.67
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	4.99
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.71
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.39
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	14.43
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	7.53
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	5.19
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	3.79
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.53
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.28
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	5.74
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	4.63
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.91
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.61
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	14.22
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1.20
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.84
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.