Gene detail

Detailed information of CAB4013176.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4013176.1, COP9 signalosome complex subunit 1 [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Sequence

No sequence record for CAB4013176.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRT5	COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1
Q99LD4	COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1
P97834	COP9 signalosome complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Gps1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005173 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10602 all species →	RPN7	26S proteasome subunit RPN7	Repeat	Interproscan
PF21151 all species →	CSN1_C	COP9 signalosome complex subunit 1, C-terminal helix	Domain	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019585 all species →	Family	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR045135 all species →	Domain	26S proteasome regulatory subunit Rpn7, N-terminal	Interproscan
IPR048624 all species →	Domain	COP9 signalosome complex subunit 1, C-terminal helix	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14145 all species →	26S PROTESOME SUBUNIT 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12175	GPS1, COPS1, CSN1; COP9 signalosome complex subunit 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.