Gene detail

Detailed information of CAB4013409.1 in Paramuricea clavata

Genomic Location: pcla8_s008111:16465...20719
NR annotation: CAB4013409.1, argonaute-2 isoform X1 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

PACLA_8A073078

ATGGTGCCTAGTGACATATCCAATATCCCTGCCTCCTCACTCGATGCAGTTAATAAACCGAAAACACCACCTCTAGAATCATATGAAGTAAGTGAGTTAACGAAGACGCTTGAACCGTTGAATATCAGATCGAGACCTCATCTTCGAACTCAACCTTCAAAAGCTGCTACCAAATCGAAAGCTTCCGGACAGCATCCTGGTCCCAGGAGTAAACCCGTAAAAGGCTTTCAGCCTCCTACAACCACTTCTACTCGACCACCCCGGTCAGAAAAAGCAGAACCAAGGCCCCCTCGTCGACCAGACAAAGGTGGTACACTAGGCCGACGAATCAAGCTACGTGTGAACTTTCTTCCTGTGAGTTTGCCAGAAATAGATATTCATCATTACCGTACCGAAATCATCGCGAAAGGCTACGAGTCTGGCAAAGGGTATACAAAGAGGGAAGCTCCCAAGATAATAAAATGCATGGTTGAGCAGTATCAAAACGCTAATCCACATGGTCCAAAACTGGTATATGACAAGAACGGAGAAAATGTATACTGCAAAATACCGATTCCTGGTATTGAGAACAGTCGTGAATACCAGGTTTTGTTTTCCACGGATAATGGTAAGCAACGGGAATACACCGTTAAGATCAAGTGGGTTAGCAAAGTCAGTTTATACGACTTAAACGAGGCACTTAAAGGAAATCGGACAGAGATACCATACGATGCAATGCAAGCTGTAGAGGTCGTGTTGCGACACCTGCCGAACATGAACAGTATTCCGATAGGATCATCCTTTTATAATCATCCAGATGGGCGTGAGAAAGAGCTCGGATTTGGCGTACAAGTTTGGAATGGGACATTCCTTAGTATTCGACCAACGCAATGGAAGATGATGATGTTGAATGTGGATACTTGTTCCACTGTGATCTATAAAGCACAGCCTGTCCTGAATTTTTTGTGTGAGTACTTCGGGTTGGAGAGGCCACCAAGGTATCTTAGTAGCGAACAAATAGAGGATTTCAATGATGAGATTAACGACCTCAAAATTGAGACGATTCATGTCAAGAGGAAACAGAGAGTTGCTGGTTTATCAACCGAATCAGCTAAGAAAAAAATATTCGATTGTGATGGTAAAAGTGTATCTGTGTTTGAGTATTTTAAAGAGAGACATAACATTACGCTTCTGTATCCAGATCTTCCTTGCCTTAAGCTAGGTAACAATGGCGCTTGTATTCCAATGGAACTCTGCAACATTATGGAAGGTCAACGCAAACAAGGGAAACTCACGAAGGAACAGTTACAAACAATGATAAAACACACAGCTCTACCAGCACCTGAACGCCAACAGTTAATCAATAATTTAGTTCGAAGTGCTAAGTTTGATAAAGACGAATTCCTCGCGGACTTTGGTTTTAAAGTTAGTCAAGATTTGCCACGACTAACAGGAAGAGTGTTAAAGCCGCCAACGATTGAATATGGGCAAGCGGAGAAGGAATTGCCAAGAAACGGTGCATGGAACATGCAACACAAATCGTATAAGACGGTTGATTTAAAAGAATGGGCAATAGTTTCGTTCGAGAATCAACGTTTTTTGAATGGTGTAGGTCTAGATAAATTTGTTAGCTCTTTAGTTCAAGCAGGAAGAGATAAAGGCTTTTCCATCCACCCATCCCCTTGCTATCGTGAGTTTATGCATGGATCGGAAAGAATCGGTCGGCTGTTTCAAGATTTATCCCGCCGTTATCCCAATTTGCAACTCATCATCGTTATTTTACCTGGTAAAGGAAACCTTGATGCATATTACGAAGCAGTCAAGTATTTCGGCGACGTCTTTTACGGCATTCGAACCCAGGTAATTAAGGCGAATACAGCCAGCAAGAAAGCTAGTGACAGGCAAACAATGGCAAATATTTGTCTGAAGATTAACGCAAAACTCGGTGGTACGACGTCCATTCTAGACAAACGTGAGAGATCGGAAATACTTGGTCGACCCGTGATTATTTTTGGAGCTGATGTCACACATCCATCACCACGTGACGTGAATAGTCCATCAATTGCTGCTGTCGTTGCTAGTATGGACTCGAACACAAACCTTTACAGTGCTGAAGTGCGCGTCCAAGAACGGCGTAAAGAAGTTATTACGGAGTTGAAGGACATTGTTAAAAATCTCTTGAAAAAGTTTAGGGCAGCAACTCGTGCACAACCTGAAAAAATTATCTTCTATCGAGATGGTGTAGGTGAAGGACAGTTCAAAGATGTCCTCCTTCAGGAGCTTCGCGCAATCCAACTTGCGTGTTACGAATTGCACGAGAGCTTTAAACCAGCCATCACTTTTATTGTTGTCCAGAAGCGTCATCACACCCGGTTCTTTGCTGAAGAAACCAGAGATCAATGCGGAAAGAGTAAGAATATCCCTCCTGGAACGGTCGTCGATACAGATGTATGCCATCCCTATGAGTTCGATTGGTACCTGTGCAGTCATGCTGGTATACAAGGAACTAGTAAGCCAGCACATTATCATGTTTTATACGATGATAGTAATTTTACGTCTGATCAGTTGCAGACCTTGTCTAATCAATTATGTCATACCTACGTGCGGTGCGCCAGAGCTGTTTCCATACCTGCCCCTGCCTACTATGCTCATCACGTAGCATTCCGAGCGCGCTATCATTTAGGAATGCTGACAAGAGGTCGAAGAGGCAATGCTCTTTCGCTTAAGGAGATGTCAGATGCGGTGAATATACACGCAAGAATGACGAATACGATGTATTTTGCATAA

Transcript

rna-PACLA_8A073078

CCATAAGAATATCTTCACTTTGTTAGCCCACAACGCAATCCTCGAGTTTATAAGGTGTTGGGGTTCGATTAAATTTATGTTACCTCTTTTGACACACCCTACCTTTCGTATACGTCACGTCTCTAAATTCTCGAAGTCAAGAGATGGCGGAACGTCAACTGATCTGACCTTAAAGCTATCGCCAGCTATTATTTTCGCTGCGCAAGTTTAAAATATCATAGCGCAATAAATTGTTTGGAATGTGTATGCAGGACCATAATTCTTGATGTGTTTTATTCCAGGAACAAGCACCCCAGAGACATGAAGCATCCACGTCTTTACCACAAACACAATCGAAGGCAGTCGCAACTTTAAAATCAGAACAGAGACGTGTATCTCCATATGATGAAGGTGATGCAAAATCTGCGCAACTCTCAAGTATTAAACCAGAAATTCATGTCTCTCATCAGCAAATGGTGCCTAGTGACATATCCAATATCCCTGCCTCCTCACTCGATGCAGTTAATAAACCGAAAACACCACCTCTAGAATCATATGAAGTAAGTGAGTTAACGAAGACGCTTGAACCGTTGAATATCAGATCGAGACCTCATCTTCGAACTCAACCTTCAAAAGCTGCTACCAAATCGAAAGCTTCCGGACAGCATCCTGGTCCCAGGAGTAAACCCGTAAAAGGCTTTCAGCCTCCTACAACCACTTCTACTCGACCACCCCGGTCAGAAAAAGCAGAACCAAGGCCCCCTCGTCGACCAGACAAAGGTGGTACACTAGGCCGACGAATCAAGCTACGTGTGAACTTTCTTCCTGTGAGTTTGCCAGAAATAGATATTCATCATTACCGTACCGAAATCATCGCGAAAGGCTACGAGTCTGGCAAAGGGTATACAAAGAGGGAAGCTCCCAAGATAATAAAATGCATGGTTGAGCAGTATCAAAACGCTAATCCACATGGTCCAAAACTGGTATATGACAAGAACGGAGAAAATGTATACTGCAAAATACCGATTCCTGGTATTGAGAACAGTCGTGAATACCAGGTTTTGTTTTCCACGGATAATGGTAAGCAACGGGAATACACCGTTAAGATCAAGTGGGTTAGCAAAGTCAGTTTATACGACTTAAACGAGGCACTTAAAGGAAATCGGACAGAGATACCATACGATGCAATGCAAGCTGTAGAGGTCGTGTTGCGACACCTGCCGAACATGAACAGTATTCCGATAGGATCATCCTTTTATAATCATCCAGATGGGCGTGAGAAAGAGCTCGGATTTGGCGTACAAGTTTGGAATGGGACATTCCTTAGTATTCGACCAACGCAATGGAAGATGATGATGTTGAATGTGGATACTTGTTCCACTGTGATCTATAAAGCACAGCCTGTCCTGAATTTTTTGTGTGAGTACTTCGGGTTGGAGAGGCCACCAAGGTATCTTAGTAGCGAACAAATAGAGGATTTCAATGATGAGATTAACGACCTCAAAATTGAGACGATTCATGTCAAGAGGAAACAGAGAGTTGCTGGTTTATCAACCGAATCAGctaagaaaaaaatattcgaTTGTGATGGTAAAAGTGTATCTGtgtttgagtattttaaagagaGACATAACATTACGCTTCTGTATCCAGATCTTCCTTGCCTTAAGCTAGGTAACAATGGCGCTTGTATTCCAATGGAACTCTGCAACATTATGGAAGGTCAACGCAAACAAGGGAAACTCACGAAGGAACAGTTACAAACAATGATAAAACACACAGCTCTACCAGCACCTGAACGCCAACAGTTAATCAATAATTTAGTTCGAAGTGCTAAGTTTGATAAAGACGAATTCCTCGCGGactttggttttaaagttagtCAAGATTTGCCACGACTAACAGGAAGAGTGTTAAAGCCGCCAACGATTGAATATGGGCAAGCGGAGAAGGAATTGCCAAGAAACGGTGCATGGAACATGCAACACAAATCGTATAAGACGGTTGATTTAAAAGAATGGGCAATAGTTTCGTTCGAGAATCAACGTTTTTTGAATGGTGTAGGTCTAGATAAATTTGTTAGCTCTTTAGTTCAAGCAGGAAGAGATAAAGGCTTTTCCATCCACCCATCCCCTTGCTATCGTGAGTTTATGCATGGATCGGAAAGAATCGGTCGGCTGTTTCAAGATTTATCCCGCCGTTATCCCAATTTGCAACTCATCATCGTTATTTTACCTGGTAAAGGAAACCTTGATGCATATTACGAAGCAGTCAAGTATTTCGGCGACGTCTTTTACGGCATTCGAACCCAGGTAATTAAGGCGAATACAGCCAGCAAGAAAGCTAGTGACAGGCAAACAATGGCAAATATTTGTCTGAAGATTAACGCAAAACTCGGTGGTACGACGTCCATTCTAGACAAACGTGAGAGATCGGAAATACTTGGTCGACCCGTGATTATTTTTGGAGCTGATGTCACACATCCATCACCACGTGACGTGAATAGTCCATCAATTGCTGCTGTCGTTGCTAGTATGGACTCGAACACAAACCTTTACAGTGCTGAAGTGCGCGTCCAAGAACGGCGTAAAGAAGTTATTACGGAGTTGAAGGACATTGTTAAAAATCTCTTGAAAAAGTTTAGGGCAGCAACTCGTGCACAACCTGAAAAAATTATCTTCTATCGAGATGGTGTAGGTGAAGGACAGTTCAAAGATGTCCTCCTTCAGGAGCTTCGCGCAATCCAACTTGCGTGTTACGAATTGCACGAGAGCTTTAAACCAGCCATCACTTTTATTGTTGTCCAGAAGCGTCATCACACCCGGTTCTTTGCTGAAGAAACCAGAGATCAATGCGGAAAGAGTAAGAATATCCCTCCTGGAACGGTCGTCGATACAGATGTATGCCATCCCTATGAGTTCGATTGGTACCTGTGCAGTCATGCTGGTATACAAGGAACTAGTAAGCCAGCACATTATCATGTTTTATACGATGATAGTAATTTTACGTCTGATCAGTTGCAGACCTTGTCTAATCAATTATGTCATACCTACGTGCGGTGCGCCAGAGCTGTTTCCATACCTGCCCCTGCCTACTATGCTCATCACGTAGCATTCCGAGCGCGCTATCATTTAGGAATGCTGACAAGAGGTCGAAGAGGCAATGCTCTTTCGCTTAAGGAGATGTCAGATGCGGTGAATATACACGCAAGAATGACGAATACGATGTATTTTGCATAAAGATGCACAGTCAAGCCAATGGAGTTTCTGTTTAAAAATTACTTGTATTTTGAACAGTTACGTTGTCTTTTTACGGCAGGGCTAAAACCTTGATTTTCGGAAACAAAACTATAAacgtttattatatggcatttattggcatttatacttgaaaaaaAACCCAAGAAACTAAGAAAGTTAtaatttgaaatgcatattaatagcgtggtacacatttggtcgaagaaaacaaaaaataccaatgtaatTCAATTAAATACCaatttccactaaaaaccattcgcaaatatcttattaataacaaattaaattataatttcaaattttcaattagttttgatGTTTTagaatgcatgcgtttgtttttacaaccgctgaaagtgcttctcagccaatcaccggaaatgcttgccatataataaaagcctatattcacttcgccttcggctcagcgaatataggcttgtaatcacctcgccttcggcggctaattgttaaatataccaAATGCTAGATGCGTTTACTCACCCAGTGCACTTTTCCAACTTTTCCATTTATTAGCTTGTTGATCCTATTTGTAGCTCCAAATCACTCATGACTAGaaatacagtgtgtataaaaaaaactgaccCTTTCacattcaaattagctataacatATTgcagtaatttgacagctctaattgctttgaacaCAAGGTGTTGTACTCGATCacgggacaaaactcaaagaaataaaaattagaaaatttaaattttaccaTACGTCAccatacaacgttatacaagactatacaacaatatataaggctatacgacactgtacggcactatacaacgttatacaagactatatgacactatgcaagactatacaacactatactaCACTATAGACGACTATTATACAAGaataattactgacggtcataataacctattgttttctctctgcattatatcagcgaatgtcgagaagttttagcgttcttctaaaaaacgggagcggtcttttttaattgtagggaaattcccagg

Protein

Uniprot

Uniprot term	Description
O77503	Protein argonaute-2 (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=AGO2 PE=1 SV=2
Q8CJG0	Protein argonaute-2 OS=Mus musculus OX=10090 GN=Ago2 PE=1 SV=3
Q9QZ81	Protein argonaute-2 OS=Rattus norvegicus OX=10116 GN=Ago2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02170	PAZ	PAZ domain	Domain	Interproscan
PF16488	ArgoL2	Argonaute linker 2 domain	Family	Interproscan
PF02171	Piwi	Piwi domain	Family	Interproscan
PF08699	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan
PF16486	ArgoN	N-terminal domain of argonaute	Domain	Interproscan
PF16487	ArgoMid	Mid domain of argonaute	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR003100	Domain	PAZ domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR045246	Domain	Argonaute-like, PIWI domain	Interproscan
IPR032472	Domain	Argonaute linker 2 domain	Interproscan
IPR003165	Domain	Piwi domain	Interproscan
IPR014811	Domain	Argonaute, linker 1 domain	Interproscan
IPR036085	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR032474	Domain	Protein argonaute, N-terminal	Interproscan
IPR032473	Domain	Protein argonaute, Mid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198	Molecular Function	miRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11593	ELF2C, AGO; eukaryotic translation initiation factor 2C	-	Chromosome and associated proteins	ko03036	deepkoala