Gene detail

Detailed information of CAB4013712.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4013712.1, isoprenoid synthase domain-containing -like, partial [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Sequence

No sequence record for CAB4013712.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JPF9	D-ribitol-5-phosphate cytidylyltransferase OS=Danio rerio OX=7955 GN=crppa PE=2 SV=2
Q5S6T3	D-ribitol-5-phosphate cytidylyltransferase OS=Rattus norvegicus OX=10116 GN=Crppa PE=2 SV=1
Q5RJG7	D-ribitol-5-phosphate cytidylyltransferase OS=Mus musculus OX=10090 GN=Crppa PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003757 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01128 all species →	IspD	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018294 all species →	Conserved_site	4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site	Interproscan
IPR034683 all species →	Family	Cytidylyltransferase IspD/TarI	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43015 all species →	D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan
GO:0047349 all species →	Molecular Function	D-ribitol-5-phosphate cytidylyltransferase activity	Interproscan
GO:0070567 all species →	Molecular Function	cytidylyltransferase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0008299 all species →	Biological Process	isoprenoid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00991	ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	EC:2.7.7.60	Terpenoid backbone biosynthesis	ko00900	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.