Genomic Location: not available for this species
NR annotation: CAB4013726.1, acyl- synthetase short-chain family member 3, mitochondrial, partial, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4013726.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5REB8 | Acyl-CoA synthetase short-chain family member 3, mitochondrial OS=Pongo abelii OX=9601 GN=ACSS3 PE=2 SV=1 |
| Q9H6R3 | Acyl-CoA synthetase short-chain family member 3, mitochondrial OS=Homo sapiens OX=9606 GN=ACSS3 PE=1 SV=1 |
| A7MB45 | Acyl-CoA synthetase short-chain family member 3, mitochondrial OS=Bos taurus OX=9913 GN=ACSS3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000999 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00501 all species → | AMP-binding | AMP-binding enzyme | Family | Interproscan |
| PF05699 all species → | Dimer_Tnp_hAT | hAT family C-terminal dimerisation region | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000873 all species → | Domain | AMP-dependent synthetase/ligase domain | Interproscan |
| IPR008906 all species → | Domain | HAT, C-terminal dimerisation domain | Interproscan |
| IPR042099 all species → | Homologous_superfamily | ANL, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43347 all species → | ACYL-COA SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0050218 all species → | Molecular Function | propionate-CoA ligase activity | Interproscan |
| GO:0046983 all species → | Molecular Function | protein dimerization activity | Interproscan |
CAB4013726.1.Transcript abundance of CAB4013726.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
