Genomic Location: not available for this species
NR annotation: CAB4013802.1, E3 ubiquitin- ligase UBR3-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4013802.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| F1QJX5 | E3 ubiquitin-protein ligase ubr3 OS=Danio rerio OX=7955 GN=ubr3 PE=2 SV=2 |
| Q5U430 | E3 ubiquitin-protein ligase UBR3 OS=Mus musculus OX=10090 GN=Ubr3 PE=1 SV=3 |
| Q6ZT12 | E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens OX=9606 GN=UBR3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002540 (this species only) |
| Ubiquitin family | E3|E3 activity|UBR-box · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02207 all species → | zf-UBR | Putative zinc finger in N-recognin (UBR box) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039164 all species → | Family | E3 ubiquitin-protein ligase UBR1-like | Interproscan |
| IPR003126 all species → | Domain | Zinc finger, UBR-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21497 all species → | UBIQUITIN LIGASE E3 ALPHA-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000151 all species → | Cellular Component | ubiquitin ligase complex | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0071596 all species → | Biological Process | ubiquitin-dependent protein catabolic process via the N-end rule pathway | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
CAB4013802.1.Transcript abundance of CAB4013802.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
